5GQE
Crystal structure of michaelis complex of xylanase mutant (T82A, N127S, and E128H) from Streptomyces olivaceoviridis E-86
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5gqea2 | All beta proteins | beta-Trefoil | Ricin B-like lectins | automated matches | automated matches | (Streptomyces olivaceoviridis ) [TaxId: 1921 ], | SCOPe (2.08) |
A | d5gqea1 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | beta-glycanases | automated matches | (Streptomyces olivaceoviridis ) [TaxId: 1921 ], | SCOPe (2.08) |
B | d5gqeb2 | All beta proteins | beta-Trefoil | Ricin B-like lectins | automated matches | automated matches | (Streptomyces olivaceoviridis ) [TaxId: 1921 ], | SCOPe (2.08) |
B | d5gqeb1 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | beta-glycanases | automated matches | (Streptomyces olivaceoviridis ) [TaxId: 1921 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ricin B-like lectins | 8035529 | 3000678 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | (Trans)glycosidases | 8035532 | 3000313 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | (Trans)glycosidases | 8035532 | 3000313 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ricin B-like lectins | 8035529 | 3000678 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ricin_B_lectin | e5gqeA1 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ricin_B_lectin | ECOD (1.6) |
A | Glyco_hydro_10 | e5gqeA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_10 | ECOD (1.6) |
B | Ricin_B_lectin | e5gqeB1 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ricin_B_lectin | ECOD (1.6) |
B | Glyco_hydro_10 | e5gqeB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glyco_hydro_10 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 2.80.10.50 | Mainly Beta | Trefoil | Trefoil (Acidic Fibroblast Growth Factor, subunit A) | CATH (4.3.0) | |
B | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
B | 2.80.10.50 | Mainly Beta | Trefoil | Trefoil (Acidic Fibroblast Growth Factor, subunit A) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00331 | Glycosyl hydrolase family 10 (Glyco_hydro_10) | Glycosyl hydrolase family 10 | - | Domain | |
PF00652 | Ricin-type beta-trefoil lectin domain (Ricin_B_lectin) | Ricin-type beta-trefoil lectin domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Beta-xylanase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR044846 | Glycoside hydrolase family 10 | Family | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR035992 | Ricin B-like lectins | Homologous Superfamily | |
IPR001000 | Glycoside hydrolase family 10 domain | Domain | |
IPR031158 | Glycosyl hydrolases family 10, active site | Active Site | |
IPR000772 | Ricin B, lectin domain | Domain |