5GJ6
Functional and structural characterization of P[19] rotavirus VP8* interaction with histo-blood group antigens
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | vp4 sialic acid binding domain | 8077019 | 4002124 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8077020 | 3000120 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077020 | 3000120 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077020 | 3000120 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077020 | 3000120 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077020 | 3000120 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077020 | 3000120 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077020 | 3000120 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8077020 | 3000120 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | VP4_haemagglut | e5gj6A1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
B | VP4_haemagglut | e5gj6B1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
C | VP4_haemagglut | e5gj6C1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
D | VP4_haemagglut | e5gj6D1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
E | VP4_haemagglut | e5gj6E1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
F | VP4_haemagglut | e5gj6F1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
G | VP4_haemagglut | e5gj6G1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
H | VP4_haemagglut | e5gj6H1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: VP4_haemagglut | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
E | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
F | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
G | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
H | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00426 | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut) | Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain | This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain | Domain | |
IPR035330 | Rotavirus VP4, membrane interaction domain | Domain | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR035329 | Rotavirus VP4 helical domain | Domain | |
IPR042546 | Outer capsid protein VP4 | Family | |
IPR038017 | Rotavirus VP4, membrane interaction domain superfamily | Homologous Superfamily |