5GAO
Head region of the yeast spliceosomal U4/U6.U5 tri-snRNP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth k] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8077613 | 3000419 | SCOP2B (2022-06-29) |
K [auth A] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053281 | 3001105 | SCOP2B (2022-06-29) |
C [auth m] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8063490 | 3000419 | SCOP2B (2022-06-29) |
D [auth n] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8098694 | 3000419 | SCOP2B (2022-06-29) |
F [auth q] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8043703 | 3000419 | SCOP2B (2022-06-29) |
G [auth r] | SCOP2B Superfamily | Sm-like ribonucleoproteins | 8098668 | 3000419 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth k] | LSM | e5gaok1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
K [auth A] | PROCT | e5gaoA1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PROCT | ECOD (1.6) |
B [auth l] | LSM | e5gaol1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
C [auth m] | LSM | e5gaom1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
D [auth n] | LSM | e5gaon1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
E [auth p] | LSM | e5gaop1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
F [auth q] | LSM | e5gaoq1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
G [auth r] | LSM | e5gaor1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: LSM | ECOD (1.6) |
I [auth B] | Sec63_3rd | e5gaoB7 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Sec63_3rd | ECOD (1.6) |
I [auth B] | KOG0952 | e5gaoB11 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KOG0952 | ECOD (1.6) |
I [auth B] | Sec63_2nd_1 | e5gaoB6 | A: alpha arrays | X: HhH/H2TH | H: SAM-like subdomain in Sec63-like proteins (From Topology) | T: SAM-like subdomain in Sec63-like proteins | F: Sec63_2nd_1 | ECOD (1.6) |
I [auth B] | Sec63_2nd | e5gaoB1 | A: alpha arrays | X: HhH/H2TH | H: SAM-like subdomain in Sec63-like proteins (From Topology) | T: SAM-like subdomain in Sec63-like proteins | F: Sec63_2nd | ECOD (1.6) |
I [auth B] | Sec63_1st | e5gaoB9 | A: alpha arrays | X: Sec63 N-terminal subdomain-like (From Topology) | H: Sec63 N-terminal subdomain-like (From Topology) | T: Sec63 N-terminal subdomain-like | F: Sec63_1st | ECOD (1.6) |
I [auth B] | DEAD_1 | e5gaoB8 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_1 | ECOD (1.6) |
I [auth B] | Helicase_C_5 | e5gaoB12 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_5 | ECOD (1.6) |
I [auth B] | DEAD_1,KOG0951_2nd | e5gaoB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_1,KOG0951_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
K [auth A] | PF08084 | PROCT (NUC072) domain (PROCT) | PROCT (NUC072) domain | The PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1]. | Domain |
I [auth B] | PF02889 | Sec63 Brl domain (Sec63) | Sec63 Brl domain | - | Family |
I [auth B] | PF00270 | DEAD/DEAH box helicase (DEAD) | DEAD/DEAH box helicase | Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ... | Domain |
I [auth B] | PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |