Crystal structure of the bacteriophage phi29 tail knob protein gp9 truncation variant
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Phage tail proteins | 8093076 | 3000268 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Caudoviral knob C-terminal region-like | 8093078 | 3002674 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Phage tail proteins | 8093076 | 3000268 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Caudoviral knob C-terminal region-like | 8093078 | 3002674 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Caudoviral knob N-terminal domain-like | 8046223 | 4004966 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Caudoviral knob C-terminal region-like | 8093077 | 4007790 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Phage tail proteins | 8093076 | 3000268 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Caudoviral knob C-terminal region-like | 8093078 | 3002674 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Lipoxygenase | e5fb4C1 | A: beta barrels | X: Alkaline phosphatase-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Lipoxygenase | ECOD (v294.2) |
| B | HTH_65 | e5fb4B1 | A: beta barrels | X: P-loop domains-like | H: ARM repeat | T: ARM repeat | F: HTH_65 | ECOD (v294.2) |
| A | e5fb4A1 | A: beta barrels | X: omega toxin-like | H: omega toxin-related | T: omega toxin-related | F: | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF16838 | Caudoviral major tail protein N-terminus (Caud_tail_N) | Caudoviral major tail protein N-terminus | This is the N-terminal domain of the major tail protein, or knob protein, from Caudovirales [1]. | Domain | |
| PF20934 | Bacillus phage phi29, Tail knob protein gp9, C-terminal domain (phi29_gp9_C) | Bacillus phage phi29, Tail knob protein gp9, C-terminal domain | This domain is found at the C-terminal end of Tail knob protein gp9 from Bacillus phage phi29 and similar proteins from tailed bacteriophages. This protein blocks the end of the tube before DNA ejection while forming a channel perforating the host me ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR031772 | Tail knob protein gp9, N-terminal | Domain | |
| IPR048710 | Tail knob protein gp9, C-terminal domain | Domain |














