5F9R
Crystal structure of catalytically-active Streptococcus pyogenes CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA primed for target DNA cleavage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8092300 | 3000143 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8092300 | 3000143 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | His-Me finger endonucleases | 8048679 | 3001893 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8092300 | 3000143 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Cas9 BH domain-like | 8045840 | 3002579 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Cas9 PI domain-like | 8092301 | 3002581 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Cas9 REC domain-like | 8045843 | 3002580 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF16592,PF16593 | e5f9rB4 | A: alpha complex topology | X: CRISPR-associated endonuclease Cas9 alpha-helical lobe | H: CRISPR-associated endonuclease Cas9 alpha-helical lobe (From Topology) | T: CRISPR-associated endonuclease Cas9 alpha-helical lobe | F: PF16592,PF16593 | ECOD (1.6) |
A [auth B] | PF16595 | e5f9rB5 | A: a+b two layers | X: SSHS domain | H: SSHS domain in CRISPR-associated endonuclease Cas9 (From Topology) | T: SSHS domain in CRISPR-associated endonuclease Cas9 | F: PF16595 | ECOD (1.6) |
A [auth B] | PF16595 | e5f9rB3 | A: a+b complex topology | X: CRISPR-associated endonuclease Cas9 C-terminal domain (From Topology) | H: CRISPR-associated endonuclease Cas9 C-terminal domain (From Topology) | T: CRISPR-associated endonuclease Cas9 C-terminal domain | F: PF16595 | ECOD (1.6) |
A [auth B] | PF22702 | e5f9rB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF22702 | ECOD (1.6) |
A [auth B] | PF13395 | e5f9rB2 | A: few secondary structure elements | X: His-Me finger endonucleases (From Homology) | H: His-Me finger endonucleases | T: His-Me finger endonucleases | F: PF13395 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF16592 | REC lobe of CRISPR-associated endonuclease Cas9 (Cas9_REC) | REC lobe of CRISPR-associated endonuclease Cas9 | - | Family |
A [auth B] | PF16593 | Bridge helix of CRISPR-associated endonuclease Cas9 (Cas9-BH) | Bridge helix of CRISPR-associated endonuclease Cas9 | - | Family |
A [auth B] | PF16595 | PAM-interacting domain of CRISPR-associated endonuclease Cas9 (Cas9_PI) | PAM-interacting domain of CRISPR-associated endonuclease Cas9 | Cas9_PI is a family found at the C-terminal of bacterial type II CRISPR system Cas9 endonuclease. This domain adopts a novel protein fold that is unique to the Cas9 family. It is positioned in the structure-DNA-complex to recognise the PAM sequence o ... | Domain |
A [auth B] | PF13395 | HNH endonuclease (HNH_4) | HNH endonuclease | This HNH nuclease domain is found in CRISPR-related proteins. | Domain |