5F3J
Crystal structure of DBP in complex with inhibitory monoclonal antibody 2D10
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Duffy_binding | e5f3jA1 | A: alpha bundles | X: Duffy-binding-like domain, N-terminal subdomain (From Topology) | H: Duffy-binding-like domain, N-terminal subdomain (From Topology) | T: Duffy-binding-like domain, N-terminal subdomain | F: Duffy_binding | ECOD (1.6) |
A | PTZ00176 | e5f3jA2 | A: alpha bundles | X: Duffy-binding-like domain, C-terminal subdomain (From Topology) | H: Duffy-binding-like domain, C-terminal subdomain (From Topology) | T: Duffy-binding-like domain, C-terminal subdomain | F: PTZ00176 | ECOD (1.6) |
B | Duffy_binding | e5f3jB1 | A: alpha bundles | X: Duffy-binding-like domain, N-terminal subdomain (From Topology) | H: Duffy-binding-like domain, N-terminal subdomain (From Topology) | T: Duffy-binding-like domain, N-terminal subdomain | F: Duffy_binding | ECOD (1.6) |
B | PTZ00176 | e5f3jB2 | A: alpha bundles | X: Duffy-binding-like domain, C-terminal subdomain (From Topology) | H: Duffy-binding-like domain, C-terminal subdomain (From Topology) | T: Duffy-binding-like domain, C-terminal subdomain | F: PTZ00176 | ECOD (1.6) |
C | V-set_8 | e5f3jC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C | V-set | e5f3jC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D | V-set_8 | e5f3jD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D | V-set | e5f3jD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1310.20 | Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Duffy-antigen binding domain | CATH (4.3.0) |
A | 1.20.58.830 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
B | 1.20.1310.20 | Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Duffy-antigen binding domain | CATH (4.3.0) |
B | 1.20.58.830 | Mainly Alpha | Up-down Bundle | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
2D10 | SCFV-KAPPA-HEAVY | Mus musculus (house mouse) | IGKV2-112*01, IGKJ5*01, IGHV1-82*01, IGHJ2*01 | V-DOMAIN V-KAPPA, V-DOMAIN VH | IG | SCFV-KAPPA-HEAVY | IMGT (202440-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05424 | Duffy binding domain (Duffy_binding) | Duffy binding domain | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Duffy receptor | - | |||
Antibody 2D10 single chain variable fragment | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043057 | Erythrocyte binding antigen 175, C-terminal domain superfamily | Homologous Superfamily | |
IPR008602 | Duffy-antigen binding domain | Domain | |
IPR021620 | Erythrocyte binding antigen 175, C-terminal | Domain | |
IPR021015 | Duffy-antigen binding, C-terminal | Domain | |
IPR042202 | Duffy-antigen binding superfamily | Homologous Superfamily | |
IPR021032 | Duffy-antigen binding, N-terminal | Domain |