5F1U
biomimetic design results in a potent allosteric inhibitor of dihydrodipicolinate synthase from Campylobacter jejuni
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5f1ua_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I aldolase | Dihydrodipicolinate synthase | (Campylobacter jejuni ) [TaxId: 197 ], | SCOPe (2.08) |
B | d5f1ub_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I aldolase | Dihydrodipicolinate synthase | (Campylobacter jejuni ) [TaxId: 197 ], | SCOPe (2.08) |
C | d5f1uc_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I aldolase | Dihydrodipicolinate synthase | (Campylobacter jejuni ) [TaxId: 197 ], | SCOPe (2.08) |
D | d5f1ud_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Aldolase | Class I aldolase | Dihydrodipicolinate synthase | (Campylobacter jejuni ) [TaxId: 197 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Aldolase | 8059131 | 3000445 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Aldolase | 8059131 | 3000445 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Aldolase | 8059131 | 3000445 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Aldolase | 8059131 | 3000445 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00701 | e5f1uA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00701 | ECOD (1.6) |
B | PF00701 | e5f1uB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00701 | ECOD (1.6) |
C | PF00701 | e5f1uC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00701 | ECOD (1.6) |
D | PF00701 | e5f1uD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00701 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
B | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
C | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
D | 3.20.20.70 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020624 | Schiff base-forming aldolase, conserved site | Conserved Site | |
IPR005263 | 4-hydroxy-tetrahydrodipicolinate synthase, DapA | Family | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR020625 | Schiff base-forming aldolase, active site | Active Site | |
IPR002220 | DapA-like | Family |