5EE9
Complex structure of OSYCHF1 with GMP-PNP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d5ee9b1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
B | d5ee9b2 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | TGS-like | automated matches | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
A | d5ee9a1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | automated matches | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
A | d5ee9a2 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | TGS-like | automated matches | automated matches | Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | YchF-GTPase_C | e5ee9B2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: YchF-GTPase_C | ECOD (1.6) |
B | MnmE_helical_2nd | e5ee9B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
A | YchF-GTPase_C | e5ee9A2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: YchF-GTPase_C | ECOD (1.6) |
A | MnmE_helical_2nd | e5ee9A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (4.3.0) |
B | 1.10.150.300 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (4.3.0) |
A | 1.10.150.300 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family | |
PF06071 | Protein of unknown function (DUF933) (YchF-GTPase_C) | Protein of unknown function (DUF933) | This domain is found at the C terminus of the YchF GTP-binding protein (Swiss:O13998) and is possibly related to the ubiquitin-like and MoaD/ThiS superfamilies. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR031167 | OBG-type guanine nucleotide-binding (G) domain | Domain | |
IPR012676 | TGS-like | Homologous Superfamily | |
IPR004095 | TGS | Domain | |
IPR004396 | Ribosome-binding ATPase YchF/Obg-like ATPase 1 | Family | |
IPR023192 | TGS-like domain superfamily | Homologous Superfamily | |
IPR013029 | YchF, C-terminal domain | Domain | |
IPR012675 | Beta-grasp domain superfamily | Homologous Superfamily | |
IPR006073 | GTP binding domain | Domain | |
IPR041706 | YchF, N-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |