5E51
Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 1 with Faropenem adduct
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | LDT_IgD_like_2 | e5e51B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LDT_IgD_like_2 | ECOD (1.6) |
B | YkuD | e5e51B1 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: YkuD | ECOD (1.6) |
C | LDT_IgD_like_2 | e5e51C3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LDT_IgD_like_2 | ECOD (1.6) |
C | YkuD | e5e51C2 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: YkuD | ECOD (1.6) |
D | LDT_IgD_like_2 | e5e51D3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LDT_IgD_like_2 | ECOD (1.6) |
D | YkuD | e5e51D2 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: YkuD | ECOD (1.6) |
A | LDT_IgD_like_2 | e5e51A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LDT_IgD_like_2 | ECOD (1.6) |
A | YkuD | e5e51A1 | A: beta complex topology | X: L,D-transpeptidase catalytic domain-like (From Topology) | H: L,D-transpeptidase catalytic domain-like (From Topology) | T: L,D-transpeptidase catalytic domain-like | F: YkuD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.60.40.3710 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
B | 2.40.440.10 | Mainly Beta | Beta Barrel | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | CATH (4.3.0) |
C | 2.60.40.3710 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
C | 2.40.440.10 | Mainly Beta | Beta Barrel | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | CATH (4.3.0) |
D | 2.60.40.3710 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
D | 2.40.440.10 | Mainly Beta | Beta Barrel | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | CATH (4.3.0) |
A | 2.60.40.3710 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.40.440.10 | Mainly Beta | Beta Barrel | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03734 | L,D-transpeptidase catalytic domain (YkuD) | L,D-transpeptidase catalytic domain | This family of proteins are found in a range of bacteria. It has been shown that this domain can act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking [1]. This gives bacteria resistance to beta-lacta ... | Domain |