5E2A

Crystal structure of NTMT1 in complex with N-terminally methylated SPKRIA peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8040269	3000118	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	S-adenosyl-L-methionine-dependent methyltransferases	8040269	3000118	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Methyltransf_11_3	e5e2aA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Methyltransf_11_3	ECOD (1.6)
B	Methyltransf_11_3	e5e2aB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Methyltransf_11_3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)
B	3.40.50.150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Vaccinia Virus protein VP39	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05891	AdoMet dependent proline di-methyltransferase (Methyltransf_PK)	AdoMet dependent proline di-methyltransferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	N-terminal Xaa-Pro-Lys N-methyltransferase 1	catalytic activity, acting on a protein transferase activity, transferring one-carbon groups protein methyltransferase activity histone modifying activity transferase activity methyltransferase activity catalytic activity histone methyltransferase activity N-terminal protein N-methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity	protein methylation N-terminal protein amino acid methylation primary metabolic process macromolecule methylation protein alkylation N-terminal peptidyl-proline dimethylation N-terminal peptidyl-proline methylation methylation N-terminal protein amino acid modification macromolecule modification peptidyl-amino acid modification peptidyl-proline modification metabolic process protein metabolic process protein methylation N-terminal protein amino acid methylation primary metabolic process macromolecule methylation protein alkylation N-terminal peptidyl-proline dimethylation N-terminal peptidyl-proline methylation methylation N-terminal protein amino acid modification macromolecule modification peptidyl-amino acid modification peptidyl-proline modification metabolic process protein metabolic process macromolecule metabolic process protein modification process cellular process cell cycle chromosome segregation cell cycle process N-terminal peptidyl-serine trimethylation peptidyl-serine modification N-terminal peptidyl-serine methylation N-terminal peptidyl-glycine methylation peptidyl-glycine modification N-terminal peptidyl-serine dimethylation cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization spindle organization	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen
C [auth D], D [auth E]	RCC1	small GTPase binding protein binding binding enzyme binding GTPase binding histone binding chromatin binding protein heterodimerization activity protein dimerization activity sulfate binding ion binding anion binding sulfur compound binding small molecule binding small GTPase binding protein binding binding enzyme binding GTPase binding histone binding chromatin binding protein heterodimerization activity protein dimerization activity sulfate binding ion binding anion binding sulfur compound binding small molecule binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity DNA binding protein-containing complex binding organic cyclic compound binding nucleic acid binding nucleosome binding nucleosomal DNA binding chromatin DNA binding	viral process cellular process cell division cell cycle chromosome segregation cell cycle process mitotic nuclear membrane reassembly membrane biogenesis mitotic cell cycle nuclear membrane reassembly cellular component organization cellular component biogenesis cellular component assembly cellular component organization or biogenesis viral process cellular process cell division cell cycle chromosome segregation cell cycle process mitotic nuclear membrane reassembly membrane biogenesis mitotic cell cycle nuclear membrane reassembly cellular component organization cellular component biogenesis cellular component assembly cellular component organization or biogenesis endomembrane system organization membrane organization mitotic nuclear division organelle fission nuclear membrane organization membrane assembly nuclear division organelle organization nucleus organization mitotic cell cycle process mitotic nuclear membrane organization nuclear envelope organization organelle assembly non-membrane-bounded organelle assembly microtubule cytoskeleton organization spindle assembly microtubule-based process cytoskeleton organization spindle organization cell cycle phase transition G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle phase transition regulation of biological process regulation of cellular component organization regulation of cellular process regulation of cell cycle process biological regulation regulation of mitotic nuclear division regulation of organelle organization regulation of mitotic cell cycle regulation of nuclear division regulation of cell cycle mitotic spindle organization microtubule cytoskeleton organization involved in mitosis	membrane-bounded organelle condensed nuclear chromosome intracellular anatomical structure nucleus membrane-enclosed lumen nuclear chromosome chromosome cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle membrane-bounded organelle condensed nuclear chromosome intracellular anatomical structure nucleus membrane-enclosed lumen nuclear chromosome chromosome cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle condensed chromosome non-membrane-bounded organelle nuclear lumen cytoplasm nucleoplasm chromatin protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A, B	IPR008576	Alpha-N-methyltransferase NTM1	Family
C [auth D], D [auth E]	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
C [auth D], D [auth E]	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily
C [auth D], D [auth E]	IPR051553	Ran GTPase-activating	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9BV86	ovarian cancer Sjogren syndrome
C [auth D], D [auth E]	Pharos: P18754	atopic eczema glioblastoma lung cancer medulloblastoma psoriasis atypical teratoid rhabdoid tumor large cell medulloblastoma malignant colon neoplasm non-small cell lung carcinoma breast cancer lung adenocarcinoma malignant glioma primitive neuroectodermal tumor

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.