5DZM
HIV-1 Reverse Transcriptase RH domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5dzma_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Ribonuclease H | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
B [auth D] | d5dzmd_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Ribonuclease H | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
C | d5dzmc_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Ribonuclease H | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
D [auth B] | d5dzmb_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | Ribonuclease H | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ribonuclease H-like | 8099993 | 4000541 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8099994 | 3000143 | SCOP2 (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Ribonuclease H-like | 8099994 | 3000143 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribonuclease H-like | 8099994 | 3000143 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8099994 | 3000143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RNase_H | e5dzmA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H | ECOD (1.6) |
B [auth D] | RNase_H | e5dzmD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H | ECOD (1.6) |
C | RNase_H | e5dzmC1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H | ECOD (1.6) |
D [auth B] | RNase_H | e5dzmB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: RNase_H | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth D], C, D [auth B] | PF00075 | RNase H (RNase_H) | RNase H | RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth D], C, D [auth B] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A, B [auth D], C, D [auth B] | IPR002156 | Ribonuclease H domain | Domain |
A, B [auth D], C, D [auth B] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |