Annotations: 5DIR

membrane protein at 2.8 Angstroms

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	ubiquitin	e5dirD1	A: alpha arrays	X: Repetitive alpha hairpins	H: ARM repeat	T: ARM repeat	F: ubiquitin	ECOD (v295.2)
C	ubiquitin	e5dirC1	A: alpha arrays	X: Repetitive alpha hairpins	H: ARM repeat	T: ARM repeat	F: ubiquitin	ECOD (v295.2)
B	ubiquitin	e5dirB1	A: alpha arrays	X: Repetitive alpha hairpins	H: ARM repeat	T: ARM repeat	F: ubiquitin	ECOD (v295.2)
A	AAA_23, AAA_29, SbcC_Walker_B	e5dirA1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA_23, AAA_29, SbcC_Walker_B	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01252	Signal peptidase (SPase) II (Peptidase_A8)	Signal peptidase (SPase) II	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	Globomycin	-	-	-
A, B, C, D	Lipoprotein signal peptidase	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001872	Peptidase A8, signal peptidase II	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D	OPM	Transmembrane	Alpha-helical polytopic	Peptidase A8	Lipoprotein signal peptidase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Intramembrane Proteases	Lipoprotein signal peptidase II

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
E, F, G, H	5BV
E, F, G, H	ALO	Parent Component: THR
E, F, G, H	IIL	Parent Component: ILE
E, F, G, H	MLE	Parent Component: LEU : AA0337 : N-methyl-L-leucine MOD:00342