5D2M
Complex between human SUMO2-RANGAP1, UBC9 and ZNF451
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ubiquitin-like | 8043638 | 3000157 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ubiquitin-like | 8043638 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain | 8081380 | 3001897 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain | 8081380 | 3001897 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UQ_con | e5d2mA1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
D | UQ_con | e5d2mD1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
B | Rad60-SLD | e5d2mB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
E | Rad60-SLD | e5d2mE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Rad60-SLD | ECOD (1.6) |
C | RanGAP1_C | e5d2mC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ras GEF (From Topology) | T: Ras GEF | F: RanGAP1_C | ECOD (1.6) |
F | RanGAP1_C | e5d2mF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ras GEF (From Topology) | T: Ras GEF | F: RanGAP1_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
D | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
B | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
E | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C | 1.25.40.200 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ran-GTPase activating protein 1, C-terminal domain | CATH (4.3.0) |
F | 1.25.40.200 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ran-GTPase activating protein 1, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain | |
PF11976 | Ubiquitin-2 like Rad60 SUMO-like (Rad60-SLD) | Ubiquitin-2 like Rad60 SUMO-like | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050113 | Ubiquitin-conjugating enzyme | Family | |
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain | |
IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR022617 | Rad60/SUMO-like domain | Domain | |
IPR036720 | Ran-GTPase activating protein 1, C-terminal domain superfamily | Homologous Superfamily | |
IPR027038 | Ran GTPase-activating protein | Family | |
IPR001611 | Leucine-rich repeat | Repeat | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR009109 | Ran-GTPase activating protein 1, C-terminal | Domain | |
IPR013087 | Zinc finger C2H2-type | Domain | |
IPR041192 | ZNF451, PIN-like domain | Domain |