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 5CXF | pdb_00005cxf

Crystal structure of the extracellular domain of glycoprotein B from Human Cytomegalovirus

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyViral glycoprotein ectodomain-like 8072740 3001498 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyViral glycoprotein ectodomain-like 8072740 3001498 SCOP2B (2022-06-29)
ASCOP2 FamilyGlycoprotein B-like 8072739 4002622 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyViral glycoprotein ectodomain-like 8072740 3001498 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CGlyco_transf_41e5cxfC1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Glyco_transf_41ECOD (v295.2)
BGlyco_transf_41e5cxfB1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Glyco_transf_41ECOD (v295.2)
AGlyco_transf_41e5cxfA1 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Glyco_transf_41ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C2.30.29.100 Mainly Beta Roll PH-domain like CATH (4.3.0)
B2.30.29.100 Mainly Beta Roll PH-domain like CATH (4.3.0)
A2.30.29.100 Mainly Beta Roll PH-domain like CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00606Herpesvirus Glycoprotein B ectodomain (Glycoprotein_B)Herpesvirus Glycoprotein B ectodomainThis domain corresponds to the ectodomain of glycoprotein B according to ECOD. Domain
A, B, C
PF17417Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2)Herpesvirus Glycoprotein B PH-like domainThis domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. Domain
A, B, C
PF17416Herpesvirus Glycoprotein B (Glycoprot_B_PH1)Herpesvirus Glycoprotein BThis domain has a PH-like fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Envelope glycoprotein B-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR035381Herpesvirus Glycoprotein B, PH-like domain 2Domain
A, B, C
IPR035377Herpesvirus Glycoprotein B, PH-like domain 1Domain
A, B, C
IPR055341Herpesvirus glycoprotein B ectodomain C-terminalDomain
A, B, C
IPR021044Herpesvirus Glycoprotein B, antigenic domain, N-terminalDomain
A, B, C
IPR000234Herpesvirus Glycoprotein BFamily
A, B, C
IPR038631Herpesvirus Glycoprotein B, PH-like domain 2 superfamilyHomologous Superfamily