Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | KRIT1_FRMD8_FERM_C | e5cx8B1 | A: a/b three-layered sandwiches | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: C-terminal additional helical subdomain in reovirus polymerase lambda3 | F: KRIT1_FRMD8_FERM_C | ECOD (v294.1) |
| A | KRIT1_FRMD8_FERM_C | e5cx8A1 | A: a/b three-layered sandwiches | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: C-terminal additional helical subdomain in reovirus polymerase lambda3 | F: KRIT1_FRMD8_FERM_C | ECOD (v294.1) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF07980 | SusD family (SusD_RagB) | SusD family | - | Repeat | |
| PF14322 | Starch-binding associating with outer membrane (SusD-like_3) | Starch-binding associating with outer membrane | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Lipoprotein RagB | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR012944 | RagB/SusD domain | Domain | |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily | |
| IPR033985 | SusD-like, N-terminal | Domain |














