Annotations: 5CW3

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	BRCC36 C-terminal domain	8058195	3002390	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	JAB1/MPN domain-like	8053275	3001105	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	JAB1/MPN domain-like	8053275	3001105	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	BRCC36 C-terminal domain	8058195	3002390	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PF18110	e5cw3C2	A: alpha bundles	X: BRCC36 C-terminal helical domain (From Topology)	H: BRCC36 C-terminal helical domain (From Topology)	T: BRCC36 C-terminal helical domain	F: PF18110	ECOD (1.6)
C	PF01398	e5cw3C1	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF01398	ECOD (1.6)
A	PF18110	e5cw3A2	A: alpha bundles	X: BRCC36 C-terminal helical domain (From Topology)	H: BRCC36 C-terminal helical domain (From Topology)	T: BRCC36 C-terminal helical domain	F: PF18110	ECOD (1.6)
A	PF01398	e5cw3A1	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF01398	ECOD (1.6)
B	PF22299	e5cw3B2	A: alpha bundles	X: BRCC36 C-terminal helical domain (From Topology)	H: BRCC36 C-terminal helical domain (From Topology)	T: BRCC36 C-terminal helical domain	F: PF22299	ECOD (1.6)
B	PF21125	e5cw3B1	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF21125	ECOD (1.6)
D	PF22299	e5cw3D1	A: alpha bundles	X: BRCC36 C-terminal helical domain (From Topology)	H: BRCC36 C-terminal helical domain (From Topology)	T: BRCC36 C-terminal helical domain	F: PF22299	ECOD (1.6)
D	PF21125	e5cw3D2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF21125	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF18110	BRCC36 C-terminal helical domain (BRCC36_C)	BRCC36 C-terminal helical domain	This is the C-terminal domain of BRCC36, a Zn2+ dependent deubiquitinating enzyme, present in Camponotus floridanus. BRCC36 hydrolyzes lysine linked ubiquitin chains as part of macromolecular complexes that participate in either interferon signalling ...	This is the C-terminal domain of BRCC36, a Zn2+ dependent deubiquitinating enzyme, present in Camponotus floridanus. BRCC36 hydrolyzes lysine linked ubiquitin chains as part of macromolecular complexes that participate in either interferon signalling or DNA-damage recognition. The domain consists of 2 non canonical helices. The domain interacts hydrophobically with helices alpha 4 and alpha 5 of KIAA0157 in the form of a coiled coil helical bundle. This interaction helps establish the association of BRCC36 with KIAA0157, a pseudo-DUB MPN- protein that is essential for the activity of BRCC36 [1].	Domain
A, C	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	-	Family
B, D	PF22299	BRISC complex subunit FAM175B, helical domain (BRISC_FAM175B_helical)	BRISC complex subunit FAM175B, helical domain	This domain is found in BRISC complex subunit FAM175B from Camponotus floridanus and similar proteins mainly found in arthropods and nematodes. This protein is an homologue of human Abraxas 2 or KIAA0157, a component of the BRISC complex, a multiprot ...	This domain is found in BRISC complex subunit FAM175B from Camponotus floridanus and similar proteins mainly found in arthropods and nematodes. This protein is an homologue of human Abraxas 2 or KIAA0157, a component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substrates [1]. This domain, which shows an alpha-helical configuration, is normally found C-terminal to Pfam:PF21125.	Domain
B, D	PF21125	BRCA1-A complex subunit Abraxas 1 MPN domain (MPN_2A_DUB_like)	BRCA1-A complex subunit Abraxas 1 MPN domain	This entry represents the MPN domain from the Abraxas protein [1-3]. Abraxas is a component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substra ...	This entry represents the MPN domain from the Abraxas protein [1-3]. Abraxas is a component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substrates.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	BRCA1/BRCA2-containing complex subunit 3	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity polyubiquitin modification-dependent protein binding protein binding binding modification-dependent protein binding cation binding ion binding cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity polyubiquitin modification-dependent protein binding protein binding binding modification-dependent protein binding cation binding ion binding metal ion binding small molecule binding metal-dependent deubiquitinase activity metallopeptidase activity	cellular process cell cycle cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus regulation of cellular process positive regulation of signal transduction pattern recognition receptor signaling pathway response to stimulus regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly regulation of signal transduction response to biotic stimulus intracellular signal transduction cellular process cell cycle cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus regulation of cellular process positive regulation of signal transduction pattern recognition receptor signaling pathway response to stimulus regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly regulation of signal transduction response to biotic stimulus intracellular signal transduction cell communication cellular component biogenesis immune response-activating signaling pathway cellular component assembly inflammasome-mediated signaling pathway positive regulation of immune response canonical inflammasome complex assembly regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process positive regulation of pattern recognition receptor signaling pathway immune response response to other organism regulation of innate immune response response to external stimulus positive regulation of intracellular signal transduction positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway NLRP3 inflammasome complex assembly positive regulation of defense response activation of innate immune response regulation of immune response inflammatory response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular component organization positive regulation of cellular component organization regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus cellular component organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of intracellular signal transduction regulation of response to stress response to stress innate immune response protein-containing complex assembly response to external biotic stimulus cellular component organization or biogenesis positive regulation of cellular process regulation of signaling positive regulation of innate immune response defense response protein-containing complex organization positive regulation of cellular component biogenesis biological regulation defense response to symbiont regulation of cellular component biogenesis immune system process regulation of cell communication positive regulation of signaling cell division double-strand break repair primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response metabolic process macromolecule metabolic process DNA repair organonitrogen compound metabolic process proteolysis protein metabolic process	intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle protein-containing complex BRISC complex nucleus intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle protein-containing complex BRISC complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle cytoplasm BRCA1-A complex
B, D	Protein FAM175B	polyubiquitin modification-dependent protein binding protein binding binding modification-dependent protein binding cytoskeletal protein binding microtubule binding tubulin binding	non-membrane-bounded organelle assembly microtubule cytoskeleton organization mitotic cell cycle cellular component organization cellular component biogenesis cellular component assembly mitotic sister chromatid segregation cell cycle cellular component organization or biogenesis chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division non-membrane-bounded organelle assembly microtubule cytoskeleton organization mitotic cell cycle cellular component organization cellular component biogenesis cellular component assembly mitotic sister chromatid segregation cell cycle cellular component organization or biogenesis chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division organelle assembly organelle fission chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation cellular process microtubule-based process cytoskeleton organization establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell establishment of chromosome localization cell division	intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR033860	Brcc36 isopeptidase	Family
A, C	IPR037518	MPN domain	Domain
A, C	IPR040749	BRCC36, C-terminal helical domain	Domain
A, C	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain
B, D	IPR037518	MPN domain	Domain
B, D	IPR023238	FAM175 family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.