5CN1

Crystal structure of yeast GGA1_GAE domain-P21

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Clathrin adaptor appendage domain	8099108	3002052	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Clathrin adaptor appendage domain	8099108	3002052	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Clathrin adaptor appendage domain	8099108	3002052	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Clathrin adaptor appendage domain	8099108	3002052	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Alpha_adaptinC2	e5cn1A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Alpha_adaptinC2	ECOD (1.6)
B	Alpha_adaptinC2	e5cn1B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Alpha_adaptinC2	ECOD (1.6)
C	Alpha_adaptinC2	e5cn1C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Alpha_adaptinC2	ECOD (1.6)
D	Alpha_adaptinC2	e5cn1D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Alpha_adaptinC2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.1230	Mainly Beta	Sandwich	Immunoglobulin-like	Gamma-adaptin ear (GAE) domain	CATH (4.3.0)
B	2.60.40.1230	Mainly Beta	Sandwich	Immunoglobulin-like	Gamma-adaptin ear (GAE) domain	CATH (4.3.0)
C	2.60.40.1230	Mainly Beta	Sandwich	Immunoglobulin-like	Gamma-adaptin ear (GAE) domain	CATH (4.3.0)
D	2.60.40.1230	Mainly Beta	Sandwich	Immunoglobulin-like	Gamma-adaptin ear (GAE) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02883	Adaptin C-terminal domain (Alpha_adaptinC2)	Adaptin C-terminal domain	Alpha adaptin is a heterotetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This ig-fold domain is found in alpha, beta and ...	Alpha adaptin is a heterotetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This ig-fold domain is found in alpha, beta and gamma adaptins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ADP-ribosylation factor-binding protein GGA1	binding phospholipid binding lipid binding phosphatidylinositol binding protein binding ubiquitin binding ubiquitin-like protein binding	cellular localization post-Golgi vesicle-mediated transport transport intracellular transport establishment of localization vesicle-mediated transport Golgi to vacuole transport localization establishment of localization in cell vacuolar transport cellular process Golgi vesicle transport protein localization establishment of protein localization cellular localization post-Golgi vesicle-mediated transport transport intracellular transport establishment of localization vesicle-mediated transport Golgi to vacuole transport localization establishment of localization in cell vacuolar transport cellular process Golgi vesicle transport protein localization establishment of protein localization catabolic process nitrogen compound transport proteolysis involved in protein catabolic process establishment of protein localization to vacuole macromolecule catabolic process late endosome to vacuole transport modification-dependent macromolecule catabolic process late endosome to vacuole transport via multivesicular body sorting pathway proteolysis cellular macromolecule localization protein metabolic process endosome transport via multivesicular body sorting pathway protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway primary metabolic process protein localization to vacuole protein catabolic process endosomal transport establishment of protein localization to organelle protein transport modification-dependent protein catabolic process multivesicular body sorting pathway macromolecule localization protein localization to organelle ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway ubiquitin-dependent protein catabolic process metabolic process macromolecule metabolic process intracellular protein transport Golgi to endosome transport cytosolic transport	membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle trans-Golgi network cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002014	VHS domain	Domain
A, B, C, D	IPR008942	ENTH/VHS	Homologous Superfamily
A, B, C, D	IPR041198	N-terminal extension of GAT domain	Domain
A, B, C, D	IPR038425	GAT domain superfamily	Homologous Superfamily
A, B, C, D	IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Homologous Superfamily
A, B, C, D	IPR052653	ADP-ribosylation factor-binding	Family
A, B, C, D	IPR004152	GAT domain	Domain
A, B, C, D	IPR008152	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Domain
A, B, C, D	IPR008153	Gamma-adaptin ear (GAE) domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.