5CD1
Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | tRNA(1-methyladenosine) methyltransferase, catalytic subunit-like | 8089457 | 4003408 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8089458 | 3000118 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Transcription elongation factor, GreA/GreB-like | 8090639 | 3002449 | SCOP2 (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Transcription elongation factor, GreA/GreB-like | 8090639 | 3002449 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8089458 | 3000118 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Transcription elongation factor, GreA/GreB-like | 8090670 | 3002449 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Transcription elongation factor, GreA/GreB-like | 8090670 | 3002449 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Transcription elongation factor, GreA/GreB-like | 8090670 | 3002449 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Transcription elongation factor, GreA/GreB-like | 8090670 | 3002449 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GCD14_N_1 | e5cd1A2 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: GCD14_N_1 | ECOD (1.6) |
A | Methyltransf_11_4 | e5cd1A1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_4 | ECOD (1.6) |
C [auth D] | GCD14_N_1 | e5cd1D2 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: GCD14_N_1 | ECOD (1.6) |
C [auth D] | Methyltransf_11_4 | e5cd1D1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltransf_11_4 | ECOD (1.6) |
B | Gcd10p_1st | e5cd1B2 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: Gcd10p_1st | ECOD (1.6) |
B | Gcd10p_1st,Gcd10p_2nd | e5cd1B1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Gcd10p_1st,Gcd10p_2nd | ECOD (1.6) |
D [auth E] | Gcd10p_1st | e5cd1E2 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: Gcd10p_1st | ECOD (1.6) |
D [auth E] | Gcd10p_2nd | e5cd1E1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Gcd10p_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.330.20 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
C [auth D] | 3.10.330.20 | Alpha Beta | Roll | Vcp-like ATPase | Chain A, domain 2 | CATH (4.3.0) |
C [auth D] | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth D] | PF08704 | tRNA methyltransferase complex GCD14 subunit (GCD14) | tRNA methyltransferase complex GCD14 subunit | - | Family |
B, D [auth E] | PF04189 | Gcd10p family (Gcd10p) | Gcd10p family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A, C [auth D] | Q96FX7 | : |
B, D [auth E] | Q9UJA5 | :