5C14

Crystal structure of PECAM-1 D1D2 domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	C1-set	e5c14A2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set	ECOD (1.6)
A	I-set_2	e5c14A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set_2	ECOD (1.6)
B	C1-set	e5c14B2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set	ECOD (1.6)
B	I-set_2	e5c14B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: I-set_2	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Platelet endothelial cell adhesion molecule	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity molecular transducer activity transmembrane signaling receptor activity signaling receptor activity	cell adhesion cell-cell adhesion cellular process cell-cell adhesion via plasma-membrane adhesion molecules cell recognition response to stimulus immune response immune system process leukocyte migration diapedesis cellular extravasation cell migration cell motility localization cell adhesion cell-cell adhesion cellular process cell-cell adhesion via plasma-membrane adhesion molecules cell recognition response to stimulus immune response immune system process leukocyte migration diapedesis cellular extravasation cell migration cell motility localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport mononuclear cell migration myeloid leukocyte migration monocyte extravasation cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation signal transduction cell communication bicellular tight junction assembly tight junction organization apical junction assembly cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly tight junction assembly cellular component organization or biogenesis cell-cell junction assembly cell-cell junction organization cell surface receptor signaling pathway developmental process epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development epithelial cell differentiation endothelial cell development epithelial cell development cell differentiation establishment of endothelial barrier anatomical structure development neutrophil extravasation neutrophil migration granulocyte migration positive regulation of locomotion regulation of cell motility positive regulation of biological process positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion positive regulation of cellular process leukocyte cell-cell adhesion multicellular organismal process maintenance of blood-brain barrier multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis homophilic cell adhesion via plasma membrane adhesion molecules positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process regulation of phosphate metabolic process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of protein phosphorylation phosphorus metabolic process protein modification process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification regulation of phosphorus metabolic process metabolic process regulation of phosphorylation macromolecule metabolic process regulation of metabolic process protein localization regulation of localization cellular localization regulation of protein localization regulation of protein localization to cell-cell junction protein localization to cell-cell junction regulation of cellular localization cellular macromolecule localization macromolecule localization positive regulation of protein localization to cell-cell junction positive regulation of protein localization protein localization to cell junction kidney epithelium development renal system development kidney vasculature development multicellular organism development renal system vasculature development nephron development system development nephron epithelium development blood vessel development glomerular endothelium development animal organ development glomerular epithelium development vasculature development circulatory system development glomerulus development glomerulus vasculature development kidney development peptidyl-tyrosine modification positive regulation of peptidyl-tyrosine phosphorylation peptidyl-amino acid modification regulation of peptidyl-tyrosine phosphorylation peptidyl-tyrosine phosphorylation	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane cell-cell junction anchoring junction cell junction extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane cell-cell junction anchoring junction cell junction extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle membrane microdomain membrane raft protein-containing complex intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle secretory granule secretory vesicle cytoplasm organelle membrane secretory granule membrane platelet alpha granule membrane platelet alpha granule
B	Platelet endothelial cell adhesion molecule	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity molecular transducer activity transmembrane signaling receptor activity signaling receptor activity	cell adhesion cell-cell adhesion cellular process cell-cell adhesion via plasma-membrane adhesion molecules cell recognition response to stimulus immune response immune system process leukocyte migration diapedesis cellular extravasation cell migration cell motility localization cell adhesion cell-cell adhesion cellular process cell-cell adhesion via plasma-membrane adhesion molecules cell recognition response to stimulus immune response immune system process leukocyte migration diapedesis cellular extravasation cell migration cell motility localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport mononuclear cell migration myeloid leukocyte migration monocyte extravasation cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation signal transduction cell communication bicellular tight junction assembly tight junction organization apical junction assembly cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly tight junction assembly cellular component organization or biogenesis cell-cell junction assembly cell-cell junction organization cell surface receptor signaling pathway developmental process epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development epithelial cell differentiation endothelial cell development epithelial cell development cell differentiation establishment of endothelial barrier anatomical structure development neutrophil extravasation neutrophil migration granulocyte migration positive regulation of locomotion regulation of cell motility positive regulation of biological process positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion positive regulation of cellular process leukocyte cell-cell adhesion multicellular organismal process maintenance of blood-brain barrier multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis homophilic cell adhesion via plasma membrane adhesion molecules positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process regulation of phosphate metabolic process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of protein phosphorylation phosphorus metabolic process protein modification process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification regulation of phosphorus metabolic process metabolic process regulation of phosphorylation macromolecule metabolic process regulation of metabolic process protein localization regulation of localization cellular localization regulation of protein localization regulation of protein localization to cell-cell junction protein localization to cell-cell junction regulation of cellular localization cellular macromolecule localization macromolecule localization positive regulation of protein localization to cell-cell junction positive regulation of protein localization protein localization to cell junction kidney epithelium development renal system development kidney vasculature development multicellular organism development renal system vasculature development nephron development system development nephron epithelium development blood vessel development glomerular endothelium development animal organ development glomerular epithelium development vasculature development circulatory system development glomerulus development glomerulus vasculature development kidney development peptidyl-tyrosine modification positive regulation of peptidyl-tyrosine phosphorylation peptidyl-amino acid modification regulation of peptidyl-tyrosine phosphorylation peptidyl-tyrosine phosphorylation	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane cell-cell junction anchoring junction cell junction extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane cell-cell junction anchoring junction cell junction extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle membrane microdomain membrane raft protein-containing complex intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle secretory granule secretory vesicle cytoplasm organelle membrane secretory granule membrane platelet alpha granule membrane platelet alpha granule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A	IPR003598	Immunoglobulin subtype 2	Domain
A	IPR050488	Immunoglobulin Fc region receptor	Family
A	IPR003599	Immunoglobulin domain subtype	Domain
A	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A	IPR040878	IL-40-like, Ig domain	Domain
A	IPR007110	Immunoglobulin-like domain	Domain
B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B	IPR003598	Immunoglobulin subtype 2	Domain
B	IPR050488	Immunoglobulin Fc region receptor	Family
B	IPR003599	Immunoglobulin domain subtype	Domain
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR040878	IL-40-like, Ig domain	Domain
B	IPR007110	Immunoglobulin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P16284	coronary artery disease thrombocytopenia autoimmune disease juvenile dermatomyositis lung carcinoma nephrosclerosis ovarian cancer atherosclerosis pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis subependymal giant cell astrocytoma cancer tuberculosis ductal breast carcinoma in situ glioblastoma coronary artery disease thrombocytopenia autoimmune disease juvenile dermatomyositis lung carcinoma nephrosclerosis ovarian cancer atherosclerosis pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis subependymal giant cell astrocytoma cancer tuberculosis ductal breast carcinoma in situ glioblastoma interstitial cystitis lung adenocarcinoma lung disease non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma autism periodontitis pterygium breast carcinoma connective tissue disease ulcerative colitis dermatomyositis Emery-Dreifuss muscular dystrophy heart disease invasive ductal breast carcinoma lung cancer myocardial infarction osteosarcoma pancreatic intraductal papillary-mucinous neoplasm Pick disease Autistic Disorder Sjogren syndrome breast disease transitional cell carcinoma Duchenne muscular dystrophy esophageal adenocarcinoma hemangioma
B	Pharos: P16284	coronary artery disease thrombocytopenia autoimmune disease juvenile dermatomyositis lung carcinoma nephrosclerosis ovarian cancer atherosclerosis pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis subependymal giant cell astrocytoma cancer tuberculosis ductal breast carcinoma in situ glioblastoma coronary artery disease thrombocytopenia autoimmune disease juvenile dermatomyositis lung carcinoma nephrosclerosis ovarian cancer atherosclerosis pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis subependymal giant cell astrocytoma cancer tuberculosis ductal breast carcinoma in situ glioblastoma interstitial cystitis lung adenocarcinoma lung disease non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma autism periodontitis pterygium breast carcinoma connective tissue disease ulcerative colitis dermatomyositis Emery-Dreifuss muscular dystrophy heart disease invasive ductal breast carcinoma lung cancer myocardial infarction osteosarcoma pancreatic intraductal papillary-mucinous neoplasm Pick disease Autistic Disorder Sjogren syndrome breast disease transitional cell carcinoma Duchenne muscular dystrophy esophageal adenocarcinoma hemangioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.