Annotations: 5BXI

1.7 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii with Tyrosine of Tag Bound to Active Site

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d5bxil_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
K	d5bxik_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
J	d5bxij_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
I	d5bxii_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
H	d5bxih_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
G	d5bxig1	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
G	d5bxig2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
F	d5bxif_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
E	d5bxie_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
D	d5bxid1	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
D	d5bxid2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
C	d5bxic_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
B	d5bxib_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)
A	d5bxia_	Alpha and beta proteins (a+b)	Ferredoxin-like	Nucleoside diphosphate kinase, NDK	Nucleoside diphosphate kinase, NDK	automated matches	(Toxoplasma gondii ME49 ) [TaxId: 508771 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2B (2022-06-29)
A	SCOP2 Family	Nucleoside diphosphate kinase, NDK	8061530	4001261	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleoside diphosphate kinase, NDK	8061531	3001175	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	BBE	e5bxiL1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
K	BBE	e5bxiK1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
J	BBE	e5bxiJ1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
I	BBE	e5bxiI1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
H	BBE	e5bxiH1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
G	BBE	e5bxiG1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
F	BBE	e5bxiF1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
E	BBE	e5bxiE1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
D	BBE	e5bxiD1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
C	BBE	e5bxiC1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
B	BBE	e5bxiB1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)
A	BBE	e5bxiA1	A: alpha arrays	X: Single-stranded right-handed beta-helix	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BBE	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
K	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
J	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
I	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
H	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
G	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
F	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
E	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
D	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
C	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
B	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)
A	3.30.70.141	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Nucleoside diphosphate kinase-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00334	Nucleoside diphosphate kinase (NDK)	Nucleoside diphosphate kinase		Domain