5BWE
Benzylsuccinate synthase alpha-beta-gamma complex with bound toluene and fumarate
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | PFL-like | 8098209 | 4003576 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PFL-like glycyl radical enzymes | 8098210 | 3001069 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | PFL-like glycyl radical enzymes | 8098210 | 3001069 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PFL-like | e5bweA1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: PFL-like | ECOD (1.6) |
A | PFL-like | e5bweA2 | A: extended segments | X: Glycyl radical domain (From Topology) | H: Glycyl radical domain (From Topology) | T: Glycyl radical domain | F: PFL-like | ECOD (1.6) |
D | PFL-like | e5bweD1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: PFL-like | ECOD (1.6) |
D | PFL-like | e5bweD2 | A: extended segments | X: Glycyl radical domain (From Topology) | H: Glycyl radical domain (From Topology) | T: Glycyl radical domain | F: PFL-like | ECOD (1.6) |
B | EUF08673 | e5bweB1 | A: few secondary structure elements | X: HIPIP (high potential iron protein) (From Topology) | H: HIPIP (high potential iron protein) (From Topology) | T: HIPIP (high potential iron protein) | F: EUF08673 | ECOD (1.6) |
E [auth F] | EUF08673 | e5bweF1 | A: few secondary structure elements | X: HIPIP (high potential iron protein) (From Topology) | H: HIPIP (high potential iron protein) (From Topology) | T: HIPIP (high potential iron protein) | F: EUF08673 | ECOD (1.6) |
C | BssC_TutF | e5bweC1 | A: few secondary structure elements | X: HIPIP (high potential iron protein) (From Topology) | H: HIPIP (high potential iron protein) (From Topology) | T: HIPIP (high potential iron protein) | F: BssC_TutF | ECOD (1.6) |
F [auth G] | BssC_TutF | e5bweG1 | A: few secondary structure elements | X: HIPIP (high potential iron protein) (From Topology) | H: HIPIP (high potential iron protein) (From Topology) | T: HIPIP (high potential iron protein) | F: BssC_TutF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 4.10.490.20 | Few Secondary Structures | Irregular | High-Potential Iron-Sulfur Protein | Chain A | CATH (4.3.0) |
E [auth F] | 4.10.490.20 | Few Secondary Structures | Irregular | High-Potential Iron-Sulfur Protein | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01228 | Glycine radical (Gly_radical) | Glycine radical | - | Domain | |
PF02901 | Pyruvate formate lyase-like (PFL-like) | Pyruvate formate lyase-like | - | Family | |
B, E [auth F] | PF18512 | Benzylsuccinate synthase beta subunit (BssB_TutG) | Benzylsuccinate synthase beta subunit | Members of this family include benzylsuccinate synthase beta subunit found in bacteria. BssB acts as a regulator of activation and may additionally be involved in regulating access to the enzyme's active site. It adopts a fold similar to that of a hi ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
benzylsuccinate synthase alpha chain | - | |||
B, E [auth F] | benzylsuccinate synthase beta chain | - | - | |
C, F [auth G] | benzylsuccinate synthase gamma chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR051215 | Glycyl Radical Enzyme | Family | |
IPR004184 | Pyruvate formate lyase domain | Domain | |
IPR001150 | Glycine radical domain | Domain | |
IPR019777 | Formate C-acetyltransferase glycine radical, conserved site | Conserved Site | |
B, E [auth F] | IPR040565 | Benzylsuccinate synthase beta subunit | Domain |
B, E [auth F] | IPR053760 | Benzylsuccinate Synthase-like | Homologous Superfamily |
C, F [auth G] | IPR013161 | Benzylsuccinate synthase gamma subunit | Family |
C, F [auth G] | IPR038640 | Benzylsuccinate synthase gamma subunit superfamily | Homologous Superfamily |