Annotations: 5B3H

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF03514	e5b3hA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PF03514	ECOD (1.6)
C [auth D]	PF03514	e5b3hD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PF03514	ECOD (1.6)
B	PF03514	e5b3hB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PF03514	ECOD (1.6)
D [auth E]	PF03514	e5b3hE1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: PF03514	ECOD (1.6)
E [auth C]	PF22992,PF22995	e5b3hC1	A: few secondary structure elements	X: beta-beta-alpha zinc fingers	H: beta-beta-alpha zinc fingers (From Topology)	T: beta-beta-alpha zinc fingers	F: PF22992,PF22995	ECOD (1.6)
F	PF22992,PF22995	e5b3hF1	A: few secondary structure elements	X: beta-beta-alpha zinc fingers	H: beta-beta-alpha zinc fingers (From Topology)	T: beta-beta-alpha zinc fingers	F: PF22992,PF22995	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth D]	PF03514	GRAS domain family (GRAS)	GRAS domain family	-	Family
B, D [auth E]	PF03514	GRAS domain family (GRAS)	GRAS domain family	-	Family
E [auth C], F	PF22992	BIRD-IDD transcription factor, fourth C2HC zinc finger (C2CH-4th_BIRD-IDD)	BIRD-IDD transcription factor, fourth C2HC zinc finger	This C2HC zinc finger domain is found in the BIRD/INDETERMINATE DOMAIN (IDD) transcription factor family. Members of this BIRD/IDD family such as JACKDAW (JKD)/IDD10, BALDIBIS (BIB), MAGPIE (MGP)/IDD3 are required for asymmetric cell division of grou ...	This C2HC zinc finger domain is found in the BIRD/INDETERMINATE DOMAIN (IDD) transcription factor family. Members of this BIRD/IDD family such as JACKDAW (JKD)/IDD10, BALDIBIS (BIB), MAGPIE (MGP)/IDD3 are required for asymmetric cell division of ground tissue and QC specification by direct protein-protein interaction with SHR and/or SCR to control ground tissue patterning during root growth [1]. SHR-SCR functions as a transcription cofactor by binding to the zinc finger domains ot these transcription factors. Members of the BIRD/IDD family contain 4 zinc finger domains, two classical C2H2 followed by two C2HC zinc finger domains. This entry represents the fourth C2HC zinc finger domain that is involved in interaction with SHR-SCR [1].	Domain
E [auth C], F	PF22995	BIRD-IDD transcription factor, third C2HC zinc finger (C2CH-3rd_BIRD-IDD)	BIRD-IDD transcription factor, third C2HC zinc finger	This C2HC zinc finger domain is found in the BIRD/INDETERMINATE DOMAIN (IDD) transcription factor family. Members of this BIRD/IDD family such as JACKDAW (JKD)/IDD10, BALDIBIS (BIB), MAGPIE (MGP)/IDD3 are required for asymmetric cell division of grou ...	This C2HC zinc finger domain is found in the BIRD/INDETERMINATE DOMAIN (IDD) transcription factor family. Members of this BIRD/IDD family such as JACKDAW (JKD)/IDD10, BALDIBIS (BIB), MAGPIE (MGP)/IDD3 are required for asymmetric cell division of ground tissue and QC specification by direct protein-protein interaction with SHR and/or SCR to control ground tissue patterning during root growth [1]. SHR-SCR functions as a transcription cofactor by binding to the zinc finger domains ot these transcription factors. Members of the BIRD/IDD family contain 4 zinc finger domains, two classical C2H2 followed by two C2HC zinc finger domains. This entry represents the third C2HC zinc finger domain that is involved in interaction with SHR-SCR and in DNA binding [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth D]	Protein SCARECROW	transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding organic cyclic compound binding nucleic acid binding	response to stimulus response to abiotic stimulus tropism response to external stimulus gravitropism response to gravity maintenance of protein location protein localization cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization response to stimulus response to abiotic stimulus tropism response to external stimulus gravitropism response to gravity maintenance of protein location protein localization cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization maintenance of protein location in cell cellular macromolecule localization macromolecule localization protein localization to organelle cellular process maintenance of protein localization in organelle cell redox homeostasis cellular homeostasis homeostatic process developmental process cellular developmental process cell differentiation bundle sheath cell fate specification cell fate specification cell fate commitment multicellular organism development multicellular organismal process anatomical structure development pattern specification process radial pattern formation regionalization plant organ development leaf development shoot system development phyllome development system development cell division asymmetric cell division root development root system development	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity
B, D [auth E]	Protein SHORT-ROOT	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	regulation of biological process regulation of hormone metabolic process regulation of hormone levels biological regulation metabolic process regulation of biological quality regulation of metabolic process hormone metabolic process developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process radial pattern formation regulation of biological process regulation of hormone metabolic process regulation of hormone levels biological regulation metabolic process regulation of biological quality regulation of metabolic process hormone metabolic process developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process radial pattern formation regionalization plant organ development leaf development shoot system development phyllome development system development cellular process cell division asymmetric cell division regulation of cellular process negative regulation of biological process negative regulation of cell cycle negative regulation of mitotic cell cycle mitotic cell cycle regulation of mitotic cell cycle negative regulation of cellular process cell cycle regulation of cell cycle	membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle recycling endosome membrane-bounded organelle intracellular anatomical structure early endosome endosome intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle recycling endosome late endosome nucleus
E [auth C], F	Zinc finger protein JACKDAW	DNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding protein homodimerization activity protein dimerization activity transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding cation binding ion binding metal ion binding DNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding protein homodimerization activity protein dimerization activity transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding cation binding ion binding metal ion binding small molecule binding	developmental process multicellular organismal process epithelium development regulation of biological process regulation of multicellular organismal development regulation of cellular process cellular developmental process regulation of developmental process epidermal cell differentiation regulation of epidermal cell differentiation epidermis development biological regulation regulation of cell differentiation tissue development epithelial cell differentiation developmental process multicellular organismal process epithelium development regulation of biological process regulation of multicellular organismal development regulation of cellular process cellular developmental process regulation of developmental process epidermal cell differentiation regulation of epidermal cell differentiation epidermis development biological regulation regulation of cell differentiation tissue development epithelial cell differentiation regulation of epithelial cell differentiation multicellular organism development cell differentiation anatomical structure development cellular process regulation of multicellular organismal process regulation of epidermis development cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process cellular metabolic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process regulation of growth regulation of developmental growth developmental growth growth regulation of meristem growth meristem development meristem maintenance meristem growth positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of nucleobase-containing compound metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process cell division asymmetric cell division regulation of cell division protein localization localization cellular localization protein localization to organelle cellular macromolecule localization macromolecule localization protein localization to nucleus plant organ development root development system development root system development	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth D]	IPR005202	Transcription factor GRAS	Family
B, D [auth E]	IPR005202	Transcription factor GRAS	Family
E [auth C], F	IPR013087	Zinc finger C2H2-type	Domain
E [auth C], F	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily
E [auth C], F	IPR031140	Protein indeterminate-domain 1-16	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.