5B2O
Crystal structure of Francisella novicida Cas9 in complex with sgRNA and target DNA (TGG PAM)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Csx12 | e5b2oA1 | A: alpha complex topology | X: CRISPR-associated endonuclease Cas9 alpha-helical lobe | H: F. novicida CRISPR-associated endonuclease Cas9 alpha-helical lobe (From Topology) | T: F. novicida CRISPR-associated endonuclease Cas9 alpha-helical lobe | F: Csx12 | ECOD (1.6) |
A | EUF08429 | e5b2oA4 | A: a+b two layers | X: SSHS domain | H: SSHS domain in CRISPR-associated endonuclease Cas9 (From Topology) | T: SSHS domain in CRISPR-associated endonuclease Cas9 | F: EUF08429 | ECOD (1.6) |
A | EUF08577 | e5b2oA5 | A: a+b complex topology | X: CRISPR-associated endonuclease Cas9 C-terminal domain (From Topology) | H: CRISPR-associated endonuclease Cas9 C-terminal domain (From Topology) | T: CRISPR-associated endonuclease Cas9 C-terminal domain | F: EUF08577 | ECOD (1.6) |
A | EUF08586 | e5b2oA6 | A: a+b complex topology | X: CRISPR-associated endonuclease Cas9 wedge domain (From Topology) | H: CRISPR-associated endonuclease Cas9 wedge domain (From Topology) | T: CRISPR-associated endonuclease Cas9 wedge domain | F: EUF08586 | ECOD (1.6) |
A | cas_csx12 | e5b2oA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: cas_csx12 | ECOD (1.6) |
A | HNH_4_1 | e5b2oA3 | A: few secondary structure elements | X: His-Me finger endonucleases (From Homology) | H: His-Me finger endonucleases | T: His-Me finger endonucleases | F: HNH_4_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21069 | CRISPR-associated endonuclease Cas9 alpha-helical lobe (Csx12) | CRISPR-associated endonuclease Cas9 alpha-helical lobe | This entry represents the alpha-helical lobe of the Francisella novicida Cas9 protein. | Domain | |
PF22385 | CRISPR-associated endonuclease Cas9, C-terminal domain (Cas9_C_2) | CRISPR-associated endonuclease Cas9, C-terminal domain | This domain is found at the C-terminal end of CRISPR-associated endonuclease Cas9 from the gammaproteobacteria Francisella tularensis[1]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
CRISPR-associated endonuclease Cas9 |
| - | ||
Guide RNA | - | - | - | |
Target DNA | - | - | - | |
DNA (5'-D(*TP*GP*GP*TP*AP*TP*CP*GP*G)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013492 | CRISPR system subtype II-B RNA-guided endonuclease Cas9/Csx12 | Family | |
IPR049465 | CRISPR-associated endonuclease Cas9, alpha-helical lobe | Domain | |
IPR033114 | Cas9-type HNH domain | Domain |