The structure of the COPI coat linkage I
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| Y | SCOP2B Superfamily | SNARE-like | 8082715 | 3001113 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | SNARE-like | 8082715 | 3001113 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | SNARE-like | 8082715 | 3001113 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089854 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| Q | Bromodomain | e5a1vQ1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| Z | e5a1vZ1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: | ECOD (v295.2) | |
| Y | Molybdopterin | e5a1vY1 | A: alpha arrays | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: Molybdopterin | ECOD (v295.2) |
| P | Molybdopterin | e5a1vP1 | A: alpha arrays | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: Molybdopterin | ECOD (v295.2) |
| H | Molybdopterin | e5a1vH1 | A: alpha arrays | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: Molybdopterin | ECOD (v295.2) |
| X | Cytochrom_C1 | e5a1vX2 | A: alpha arrays | X: amino-terminal domain of OmpATb | H: amino-terminal domain of OmpATb | T: amino-terminal domain of OmpATb | F: Cytochrom_C1 | ECOD (v295.2) |
| X | e5a1vX4 | A: alpha arrays | X: HTH | H: HTH | T: winged helix domain | F: | ECOD (v295.2) | |
| O | TAXi_N | e5a1vO2 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: TAXi_N | ECOD (v295.2) |
| O | e5a1vO4 | A: alpha arrays | X: HTH | H: HTH | T: winged helix domain | F: | ECOD (v295.2) | |
| G | e5a1vG2 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: | ECOD (v295.2) | |
| G | e5a1vG1 | A: alpha arrays | X: HTH | H: HTH | T: winged helix domain | F: | ECOD (v295.2) | |
| W | e5a1vW1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: | ECOD (v295.2) | |
| N | e5a1vN1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: | ECOD (v295.2) | |
| F | e5a1vF1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: | ECOD (v295.2) | |
| V | Cytochrom_C1 | e5a1vV1 | A: alpha arrays | X: amino-terminal domain of OmpATb | H: amino-terminal domain of OmpATb | T: amino-terminal domain of OmpATb | F: Cytochrom_C1 | ECOD (v295.2) |
| V | Glycos_transf_1 | e5a1vV3 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Glycos_transf_1 | ECOD (v295.2) |
| M | TAXi_N | e5a1vM1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: TAXi_N | ECOD (v295.2) |
| M | Glycos_transf_1 | e5a1vM3 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Glycos_transf_1 | ECOD (v295.2) |
| E | e5a1vE1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: | ECOD (v295.2) | |
| E | Glycos_transf_1 | e5a1vE3 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Glycos_transf_1 | ECOD (v295.2) |
| U | Bromodomain | e5a1vU1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| L | Molybdopterin | e5a1vL1 | A: alpha arrays | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: Molybdopterin | ECOD (v295.2) |
| D | Bromodomain | e5a1vD1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| T | Bromodomain | e5a1vT2 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| T | e5a1vT5 | A: alpha arrays | X: PriB N-terminal domain-like | H: Rubredoxin-related | T: Aconitase iron-sulfur domain | F: | ECOD (v295.2) | |
| K | e5a1vK2 | A: alpha arrays | X: Lipocalins/Streptavidin | H: Enterocin 7A and 7B | T: Enterocin 7A and 7B | F: | ECOD (v295.2) | |
| K | Glyco_hydro_66 | e5a1vK5 | A: alpha arrays | X: Lipocalins/Streptavidin | H: SAM/DNA-glycosylase | T: SAM domain-like | F: Glyco_hydro_66 | ECOD (v295.2) |
| K | PylS_N | e5a1vK4 | A: alpha arrays | X: OB-fold | H: Nucleic acid-binding protein | T: Nucleotidyltransferase | F: PylS_N | ECOD (v295.2) |
| C | Molybdopterin | e5a1vC1 | A: alpha arrays | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: Molybdopterin | ECOD (v295.2) |
| S | Bromodomain | e5a1vS1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| R | Bromodomain | e5a1vR1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| J | Bromodomain | e5a1vJ1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| I | Bromodomain | e5a1vI1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| B | Bromodomain | e5a1vB1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
| A | Bromodomain | e5a1vA1 | A: alpha arrays | X: Ribosomal protein S7 | H: Ribosomal protein S7 | T: Ribosomal protein S7 | F: Bromodomain | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | Domain | ||
| PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat | |
| PF14806 | Coatomer beta subunit appendage platform (Coatomer_b_Cpla) | Coatomer beta subunit appendage platform | This family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan. | Domain | |
| PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | Domain | ||
| PF16381 | Coatomer subunit gamma-1 C-terminal appendage platform (Coatomer_g_Cpla) | Coatomer subunit gamma-1 C-terminal appendage platform | Coatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 ... | Domain | |
| PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat | |
| PF08752 | Coatomer gamma subunit appendage platform subdomain (COP-gamma_platf) | Coatomer gamma subunit appendage platform subdomain | COPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at U ... | Domain | |
| PF04053 | COPA/B second beta-propeller (B-prop_COPA_B_2nd) | COPA/B second beta-propeller | - | Repeat | |
| PF23953 | COPA/B TPR domain (TPR_COPA_B) | COPA/B TPR domain | - | Repeat | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
| PF04053 | COPA/B second beta-propeller (B-prop_COPA_B_2nd) | COPA/B second beta-propeller | - | Repeat | |
| PF23953 | COPA/B TPR domain (TPR_COPA_B) | COPA/B TPR domain | - | Repeat | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |














