4WB2
Crystal structure of the mirror-image L-RNA/L-DNA aptamer NOX-D20 in complex with mouse C5a complement anaphylatoxin
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Anaphylotoxins (complement system) | 8070211 | 3000387 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Anaphylotoxins (complement system) | 8070211 | 3000387 | SCOP2B (2022-06-29) |
C | SCOP2 Family | Anaphylotoxins (complement system) | 8070210 | 4000993 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Anaphylotoxins (complement system) | 8070211 | 3000387 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01821 | e4wb2A1 | A: few secondary structure elements | X: Anaphylotoxins (complement system) (From Topology) | H: Anaphylotoxins (complement system) (From Topology) | T: Anaphylotoxins (complement system) | F: PF01821 | ECOD (1.6) |
B | PF01821 | e4wb2B1 | A: few secondary structure elements | X: Anaphylotoxins (complement system) (From Topology) | H: Anaphylotoxins (complement system) (From Topology) | T: Anaphylotoxins (complement system) | F: PF01821 | ECOD (1.6) |
C | PF01821 | e4wb2C1 | A: few secondary structure elements | X: Anaphylotoxins (complement system) (From Topology) | H: Anaphylotoxins (complement system) (From Topology) | T: Anaphylotoxins (complement system) | F: PF01821 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.91.20 | Mainly Alpha | Up-down Bundle | Influenza Virus Matrix Protein | Chain A, domain 1 | CATH (4.3.0) |
B | 1.20.91.20 | Mainly Alpha | Up-down Bundle | Influenza Virus Matrix Protein | Chain A, domain 1 | CATH (4.3.0) |
C | 1.20.91.20 | Mainly Alpha | Up-down Bundle | Influenza Virus Matrix Protein | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01821 | Anaphylotoxin-like domain (ANATO) | Anaphylotoxin-like domain | C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins. ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009048 | Alpha-macroglobulin, receptor-binding | Domain | |
IPR041555 | Macroglobulin domain MG3 | Domain | |
IPR001599 | Alpha-2-macroglobulin | Domain | |
IPR048843 | Complement component 5, CUB domain | Domain | |
IPR018081 | Anaphylatoxin, complement system | Homologous Superfamily | |
IPR018933 | Netrin module, non-TIMP type | Domain | |
IPR041425 | Complement C3/4/5, macroglobulin domain MG1 | Domain | |
IPR011625 | Alpha-2-macroglobulin, bait region domain | Domain | |
IPR001134 | Netrin domain | Domain | |
IPR008993 | Tissue inhibitor of metalloproteinases-like, OB-fold | Homologous Superfamily | |
IPR011626 | Alpha-macroglobulin-like, TED domain | Domain | |
IPR000020 | Anaphylatoxin/fibulin | Domain | |
IPR036595 | Alpha-macroglobulin, receptor-binding domain superfamily | Homologous Superfamily | |
IPR002890 | Macroglobulin domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR050473 | Alpha-2-macroglobulin/Complement system | Family | |
IPR008930 | Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid | Homologous Superfamily | |
IPR040839 | Macroglobulin domain MG4 | Domain |