4PP8
Crystal structure of murine NK cell ligand RAE-1 beta in complex with NKG2D
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4pp8a_ | Alpha and beta proteins (a+b) | C-type lectin-like | C-type lectin-like | C-type lectin domain | NK cell-activating receptor nkg2d | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d4pp8b_ | Alpha and beta proteins (a+b) | C-type lectin-like | C-type lectin-like | C-type lectin domain | NK cell-activating receptor nkg2d | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C | d4pp8c_ | Alpha and beta proteins (a+b) | MHC antigen-recognition domain | MHC antigen-recognition domain | MHC antigen-recognition domain | NK cell ligand RAE-1 beta | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
D | d4pp8d_ | Alpha and beta proteins (a+b) | MHC antigen-recognition domain | MHC antigen-recognition domain | MHC antigen-recognition domain | NK cell ligand RAE-1 beta | mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | C-type lectin-like | 8033239 | 3001261 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | C-type lectin-like | 8033239 | 3001261 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | MHC antigen-recognition domain | 8036984 | 3000521 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | MHC antigen-recognition domain | 8036984 | 3000521 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00059 | e4pp8A1 | A: a+b complex topology | X: C-type lectin-like (From Homology) | H: C-type lectin-like | T: C-type lectin-like | F: PF00059 | ECOD (1.6) |
B | PF00059 | e4pp8B1 | A: a+b complex topology | X: C-type lectin-like (From Homology) | H: C-type lectin-like | T: C-type lectin-like | F: PF00059 | ECOD (1.6) |
C | PF14586 | e4pp8C1 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: PF14586 | ECOD (1.6) |
D | PF14586 | e4pp8D1 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: PF14586 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.100.10 | Alpha Beta | Roll | Mannose-Binding Protein A | Chain A | CATH (4.3.0) |
B | 3.10.100.10 | Alpha Beta | Roll | Mannose-Binding Protein A | Chain A | CATH (4.3.0) |
C | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (4.3.0) |
D | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00059 | Lectin C-type domain (Lectin_C) | Lectin C-type domain | This family includes both long and short form C-type | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016187 | C-type lectin fold | Homologous Superfamily | |
IPR001304 | C-type lectin-like | Domain | |
IPR016186 | C-type lectin-like/link domain superfamily | Homologous Superfamily | |
IPR033992 | Natural killer cell receptor-like, C-type lectin-like domain | Domain | |
IPR042169 | NKG2-D type II integral membrane protein | Family | |
IPR050208 | Antigen-presenting and immune regulatory MHC class I-related | Family | |
IPR037055 | MHC class I-like antigen recognition-like superfamily | Homologous Superfamily | |
IPR011162 | MHC classes I/II-like antigen recognition protein | Homologous Superfamily | |
IPR029287 | Retinoic acid early-inducible protein 1 | Domain |