4MJS | pdb_00004mjs

crystal structure of a PB1 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
W	d4mjsw1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
W	d4mjsw2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
U	d4mjsu1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
U	d4mjsu2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
S	d4mjss1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
S	d4mjss2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
Q	d4mjsq1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
Q	d4mjsq2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
O	d4mjso1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
O	d4mjso2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
M	d4mjsm1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
M	d4mjsm2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
K	d4mjsk1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
K	d4mjsk2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
I	d4mjsi1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
I	d4mjsi2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
G	d4mjsg1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
G	d4mjsg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
E	d4mjse1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
E	d4mjse2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
C	d4mjsc1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
C	d4mjsc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
A	d4mjsa1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	CAD & PB1 domains	PB1 domain	automated matches	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)
A	d4mjsa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
W	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2B (2022-06-29)
A	SCOP2 Family	PB1 domain	8080984	4003488	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CAD & PB1 domains	8080985	3000318	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	HicA_toxin	e4mjsX1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
V	HicA_toxin	e4mjsV1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
T	HicA_toxin	e4mjsT1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
R	HicA_toxin	e4mjsR1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
P	HicA_toxin	e4mjsP1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
N	HicA_toxin	e4mjsN1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
L	HicA_toxin	e4mjsL1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
J	HicA_toxin	e4mjsJ1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
H	HicA_toxin	e4mjsH1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
F	HicA_toxin	e4mjsF1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
D	HicA_toxin	e4mjsD1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
B	HicA_toxin	e4mjsB1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
W	HicA_toxin	e4mjsW1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
U	HicA_toxin	e4mjsU1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
S	HicA_toxin	e4mjsS1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
Q	HicA_toxin	e4mjsQ1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
O	HicA_toxin	e4mjsO1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
M	HicA_toxin	e4mjsM1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
K	HicA_toxin	e4mjsK1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
I	HicA_toxin	e4mjsI1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
G	HicA_toxin	e4mjsG1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
E	HicA_toxin	e4mjsE1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
C	HicA_toxin	e4mjsC1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)
A	HicA_toxin	e4mjsA1	A: beta barrels	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: HicA_toxin	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
V	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
T	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
R	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
P	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
N	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
L	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
J	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
H	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
F	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
D	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
B	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
W	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
U	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
S	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
Q	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
O	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
M	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
K	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
I	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
G	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
E	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
C	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PF00564	PB1 domain (PB1)	PB1 domain		Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	PF00564	PB1 domain (PB1)	PB1 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	Sequestosome-1	protein-macromolecule adaptor activity molecular adaptor activity protein-containing complex binding binding molecular sequestering activity ubiquitin-modified protein reader activity ubiquitin-like protein reader activity protein tyrosine kinase binding protein binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding protein-macromolecule adaptor activity molecular adaptor activity protein-containing complex binding binding molecular sequestering activity ubiquitin-modified protein reader activity ubiquitin-like protein reader activity protein tyrosine kinase binding protein binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding identical protein binding molecular transducer activity signaling receptor activity signaling adaptor activity SH2 domain binding protein domain specific binding molecular condensate scaffold activity ubiquitin binding ubiquitin-like protein binding ionotropic glutamate receptor binding glutamate receptor binding polyubiquitin modification-dependent protein binding modification-dependent protein binding K63-linked polyubiquitin modification-dependent protein binding protein sequestering activity protein kinase C binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus pattern recognition receptor signaling pathway negative regulation of biological process regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction cellular response to stimulus positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus pattern recognition receptor signaling pathway negative regulation of biological process regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway regulation of biological process immune response response to other organism immune response-activating cell surface receptor signaling pathway regulation of innate immune response response to external stimulus regulation of toll-like receptor 4 signaling pathway regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus negative regulation of signaling signaling positive regulation of biological process innate immune response activating cell surface receptor signaling pathway negative regulation of cell communication positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress negative regulation of cellular process innate immune response response to external biotic stimulus negative regulation of toll-like receptor 4 signaling pathway cell surface pattern recognition receptor signaling pathway regulation of signaling positive regulation of innate immune response cell surface receptor signaling pathway negative regulation of response to stimulus defense response biological regulation defense response to symbiont negative regulation of signal transduction negative regulation of immune system process immune system process toll-like receptor 4 signaling pathway regulation of cell communication cellular process negative regulation of post-translational protein modification regulation of protein modification process regulation of protein ubiquitination regulation of primary metabolic process protein ubiquitination negative regulation of protein modification process protein metabolic process negative regulation of protein ubiquitination regulation of protein modification by small protein conjugation or removal protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of protein modification by small protein conjugation or removal regulation of post-translational protein modification regulation of protein metabolic process negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal positive regulation of protein localization to plasma membrane regulation of localization cellular localization regulation of protein localization localization intracellular protein localization regulation of protein localization to membrane positive regulation of cellular process positive regulation of protein localization to cell periphery protein localization to cell periphery protein localization to plasma membrane positive regulation of protein localization to membrane regulation of protein localization to cell periphery localization within membrane protein localization to membrane regulation of cellular localization macromolecule localization positive regulation of protein localization regulation of protein localization to plasma membrane response to ischemia catabolic process autophagy process utilizing autophagic mechanism regulation of protein complex stability regulation of biological quality macroautophagy aggrephagy apoptotic process cell death programmed cell death positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process protein catabolic process macromolecule catabolic process cellular response to stress response to mitochondrial depolarisation small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction Ras protein signal transduction intracellular signal transduction regulation of intracellular signal transduction regulation of Ras protein signal transduction intracellular signaling cassette establishment of protein localization nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization intercellular transport import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell protein localization to organelle protein import into nucleus intracellular protein transport modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process fat cell proliferation cell population proliferation brown fat cell proliferation vesicle-mediated transport endosomal transport regulation of cellular component organization regulation of organelle organization cellular component organization organelle organization regulation of mitochondrion organization cellular component organization or biogenesis mitochondrion organization RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of autophagy regulation of catabolic process regulation of autophagy positive regulation of catabolic process vesicle organization endosome organization endomembrane system organization developmental process cellular developmental process cell differentiation positive regulation of cell communication modulation of chemical synaptic transmission long-term synaptic potentiation synaptic signaling positive regulation of long-term synaptic potentiation regulation of synaptic plasticity trans-synaptic signaling cell-cell signaling positive regulation of synaptic transmission chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of long-term synaptic potentiation positive regulation of signaling multicellular organismal process multicellular organismal-level homeostasis homeostatic process energy homeostasis protein targeting to vacuole involved in autophagy protein targeting establishment of protein localization to vacuole protein targeting to vacuole protein localization to vacuole vacuolar transport autophagy of peroxisome pexophagy negative regulation of ferroptosis negative regulation of programmed cell death regulation of ferroptosis ferroptosis autophagy of mitochondrion temperature homeostasis mitophagy cellular component biogenesis cellular component assembly organelle assembly membraneless organelle assembly canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction protein localization to perinuclear region of cytoplasm	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell projection sperm midpiece extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell projection sperm midpiece cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection inclusion body synapse cell junction glutamatergic synapse intracellular organelle vacuole autophagosome intracellular membrane-bounded organelle intracellular membraneless organelle sarcomere membraneless organelle contractile muscle fiber supramolecular fiber myofibril supramolecular polymer supramolecular complex amphisome autolysosome lytic vacuole secondary lysosome lysosome phagophore assembly site mitochondrion aggresome nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen Lewy body endosome intracellular vesicle endomembrane system cytoplasmic vesicle late endosome cytoplasmic ribonucleoprotein granule ribonucleoprotein granule P-body endoplasmic reticulum nuclear body PML body
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	Protein kinase C zeta type	protein binding binding insulin receptor substrate binding 14-3-3 protein binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding protein binding binding insulin receptor substrate binding 14-3-3 protein binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein-containing complex binding potassium channel regulator activity channel regulator activity ion channel regulator activity molecular function regulator activity transporter regulator activity protein serine/threonine kinase activity diacylglycerol-dependent serine/threonine kinase activity phospholipase binding enzyme binding protein serine kinase activity kinase binding protein kinase binding cation binding transition metal ion binding zinc ion binding metal ion binding	multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process regulation of interleukin-5 production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process interleukin-5 production positive regulation of cellular process regulation of biosynthetic process multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process regulation of interleukin-5 production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process interleukin-5 production positive regulation of cellular process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of interleukin-5 production cellular response to stimulus positive regulation of cell communication regulation of postsynaptic membrane potential system process positive regulation of signal transduction response to stimulus signaling modulation of chemical synaptic transmission regulation of system process positive regulation of excitatory postsynaptic potential regulation of signal transduction chemical synaptic transmission, postsynaptic cell communication positive regulation of response to stimulus synaptic signaling modulation of excitatory postsynaptic potential signal transduction regulation of biological quality trans-synaptic signaling regulation of signaling cell surface receptor signaling pathway nervous system process cell-cell signaling chemical synaptic transmission regulation of nervous system process regulation of trans-synaptic signaling regulation of response to stimulus anterograde trans-synaptic signaling regulation of cell communication excitatory postsynaptic potential regulation of membrane potential positive regulation of signaling regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion cell-substrate adhesion positive regulation of cell-matrix adhesion cell adhesion cell-matrix adhesion positive regulation of cell-substrate adhesion regulation of cell-matrix adhesion interleukin-13 production positive regulation of interleukin-13 production regulation of interleukin-13 production localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization intracellular protein localization localization within membrane protein localization to membrane regulation of cellular component organization negative regulation of cellular component organization protein-containing complex organization negative regulation of biological process regulation of cellular component biogenesis negative regulation of protein-containing complex assembly cellular component organization cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly negative regulation of cellular process cellular component organization or biogenesis establishment of cell polarity establishment or maintenance of cell polarity cell migration cell motility regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation positive regulation of T cell differentiation regulation of cell development multicellular organism development type 2 immune response positive regulation of immune response T cell activation cell differentiation regulation of type 2 immune response regulation of T-helper cell differentiation alpha-beta T cell activation regulation of immune system process positive regulation of CD4-positive, alpha-beta T cell differentiation immune response T-helper cell differentiation positive regulation of cell development immune effector process regulation of leukocyte cell-cell adhesion positive regulation of alpha-beta T cell differentiation regulation of developmental process cell development positive regulation of leukocyte cell-cell adhesion CD4-positive, alpha-beta T cell differentiation positive regulation of T-helper cell differentiation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation alpha-beta T cell differentiation T cell activation involved in immune response positive regulation of cell differentiation leukocyte activation involved in immune response positive regulation of immune effector process regulation of T-helper 2 cell differentiation regulation of cell-cell adhesion hemopoiesis cell activation positive regulation of T-helper 2 cell differentiation regulation of CD4-positive, alpha-beta T cell activation immune system process regulation of lymphocyte activation regulation of immune effector process regulation of leukocyte differentiation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation cell activation involved in immune response positive regulation of developmental process positive regulation of cell activation anatomical structure development positive regulation of leukocyte activation T cell differentiation positive regulation of immune system process developmental process positive regulation of T cell activation positive regulation of alpha-beta T cell activation regulation of immune response leukocyte differentiation cellular developmental process regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of CD4-positive, alpha-beta T cell activation cell-cell adhesion alpha-beta T cell activation involved in immune response positive regulation of hemopoiesis CD4-positive, alpha-beta T cell activation T-helper 2 cell differentiation lymphocyte activation involved in immune response regulation of lymphocyte differentiation regulation of multicellular organismal development regulation of T cell activation T cell differentiation involved in immune response positive regulation of type 2 immune response regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation cellular response to nitrogen compound negative regulation of signaling response to peptide hormone insulin receptor signaling pathway regulation of cellular response to insulin stimulus negative regulation of cell communication cell surface receptor protein tyrosine kinase signaling pathway cellular response to endogenous stimulus response to hormone enzyme-linked receptor protein signaling pathway cellular response to hormone stimulus negative regulation of response to stimulus response to endogenous stimulus regulation of insulin receptor signaling pathway response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound negative regulation of signal transduction cellular response to oxygen-containing compound cellular response to chemical stimulus negative regulation of cellular response to insulin stimulus negative regulation of insulin receptor signaling pathway response to chemical response to insulin cellular response to insulin stimulus positive regulation of cellular response to insulin stimulus positive regulation of insulin receptor signaling pathway membrane hyperpolarization interleukin-10 production regulation of interleukin-10 production positive regulation of interleukin-10 production positive regulation of synaptic transmission adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity T cell mediated immunity positive regulation of leukocyte mediated immunity T-helper 2 cell cytokine production T cell cytokine production regulation of T-helper 2 cell cytokine production leukocyte mediated immunity positive regulation of adaptive immune response positive regulation of T cell cytokine production regulation of T cell mediated immunity regulation of cytokine production involved in immune response positive regulation of T-helper 2 cell cytokine production regulation of adaptive immune response regulation of leukocyte mediated immunity positive regulation of production of molecular mediator of immune response regulation of production of molecular mediator of immune response positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity regulation of T cell cytokine production CD4-positive, alpha-beta T cell cytokine production regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains cytokine production involved in immune response production of molecular mediator of immune response adaptive immune response regulation of lymphocyte mediated immunity positive regulation of T cell mediated immunity positive regulation of cytokine production involved in immune response intracellular signal transduction positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death establishment of organelle localization vesicle cytoskeletal trafficking vesicle localization organelle transport along microtubule transport establishment of vesicle localization intracellular transport establishment of localization vesicle transport along microtubule organelle localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process regulation of localization establishment of protein localization regulation of protein localization regulation of transport regulation of establishment of protein localization positive regulation of establishment of protein localization regulation of protein transport positive regulation of protein transport positive regulation of transport protein transport positive regulation of protein localization developmental growth cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell growth cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis system development neuron projection extension plasma membrane bounded cell projection organization developmental cell growth growth nervous system development developmental growth involved in morphogenesis generation of neurons anatomical structure morphogenesis neuron development behavior learning or memory long-term memory cognition memory cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation protein localization to synapse regulation of neurotransmitter receptor localization to postsynaptic specialization membrane regulation of protein localization to synapse neurotransmitter receptor localization to postsynaptic specialization membrane regulation of protein localization to membrane regulation of receptor localization to synapse protein localization to postsynaptic specialization membrane protein localization to postsynaptic membrane regulation of protein localization to cell periphery protein-containing complex localization regulation of postsynaptic membrane neurotransmitter receptor levels regulation of cellular localization protein localization to organelle protein localization to postsynapse protein localization to cell junction receptor localization to synapse organelle organization microtubule cytoskeleton organization cytoskeleton organization membrane depolarization defense response response to stress inflammatory response regulation of interleukin-4 production positive regulation of interleukin-4 production interleukin-4 production long-term synaptic potentiation regulation of synaptic plasticity	cell-cell junction cellular anatomical structure anchoring junction cell junction membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system myelin sheath abaxonal region cell-cell junction cellular anatomical structure anchoring junction cell junction membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system myelin sheath abaxonal region myelin sheath cytoplasm cytosol cell leading edge synapse glutamatergic synapse actin filament bundle intracellular membraneless organelle actin cytoskeleton actomyosin cytoskeleton membraneless organelle stress fiber contractile actin filament bundle perinuclear region of cytoplasm cilium plasma membrane bounded cell projection ciliary basal body cell projection microtubule organizing center microtubule cytoskeleton cell periphery cell cortex cell cortex region cytoplasmic region apical cortex membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear lumen nuclear matrix vesicle apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane somatodendritic compartment axon cell body neuron projection neuronal cell body axon hillock endosome intracellular vesicle cytoplasmic vesicle postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse Schaffer collateral - CA1 synapse apical junction complex bicellular tight junction tight junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR000433	Zinc finger, ZZ-type	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR033741	Sequestosome-1, UBA domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR053793	PB1-like domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR009060	UBA-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR000270	PB1 domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR052260	Autophagy Receptor and Signaling Regulator	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR015940	Ubiquitin-associated domain	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR034866	Sequestosome-1, PB1 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR012233	Protein kinase C	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR020454	Diacylglycerol/phorbol-ester binding	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR000719	Protein kinase domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR017892	Protein kinase, C-terminal	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR053793	PB1-like domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR017441	Protein kinase, ATP binding site	Binding Site
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR000270	PB1 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR000961	AGC-kinase, C-terminal	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR047314	Protein kinase C zeta type, conserved region 1	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR034877	Protein kinase C, PB1 domain	Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR046349	C1-like domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	: Q13501	amyotrophic lateral sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis 3 neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset bone Paget disease Paget disease of bone 3 age-related macular degeneration neurodegenerative disease behavioral variant of frontotemporal dementia NONAKA MYOPATHY Paget disease of bone 2, early-onset pancreatic intraductal papillary-mucinous carcinoma sarcoma tuberculosis GNE myopathy large cell medulloblastoma amyotrophic lateral sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis 3 neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset bone Paget disease Paget disease of bone 3 age-related macular degeneration neurodegenerative disease behavioral variant of frontotemporal dementia NONAKA MYOPATHY Paget disease of bone 2, early-onset pancreatic intraductal papillary-mucinous carcinoma sarcoma tuberculosis GNE myopathy large cell medulloblastoma medulloblastoma osteosarcoma pituitary cancer Alzheimer disease spina bifida cancer hepatocellular carcinoma lung cancer myopathy, distal, with rimmed vacuoles non-small cell lung carcinoma ovarian cancer pancreatic ductal adenocarcinoma psoriasis subependymal giant cell astrocytoma distal myopathy frontotemporal dementia with motor neuron disease malignant mesothelioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.