4ADQ
CRYSTAL STRUCTURE OF THE MOUSE COLONY-STIMULATING FACTOR 1 (MCSF-1) CYTOKINE IN COMPLEX WITH THE VIRAL RECEPTOR BARF1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | 4-helical cytokines | 8074034 | 3001717 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | 4-helical cytokines | 8074034 | 3001717 | SCOP2B (2021-05-27) |
G | SCOP2B Superfamily | 4-helical cytokines | 8074034 | 3001717 | SCOP2B (2021-05-27) |
H | SCOP2B Superfamily | 4-helical cytokines | 8074034 | 3001717 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e4adqA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF22305 | e4adqA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF22305 | ECOD (1.6) |
B | F_UNCLASSIFIED | e4adqB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF22305 | e4adqB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF22305 | ECOD (1.6) |
C | F_UNCLASSIFIED | e4adqC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF22305 | e4adqC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF22305 | ECOD (1.6) |
D | F_UNCLASSIFIED | e4adqD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF22305 | e4adqD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF22305 | ECOD (1.6) |
E | PF05337 | e4adqE1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: 4-helical cytokines (From Topology) | T: 4-helical cytokines | F: PF05337 | ECOD (1.6) |
F | PF05337 | e4adqF1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: 4-helical cytokines (From Topology) | T: 4-helical cytokines | F: PF05337 | ECOD (1.6) |
G | PF05337 | e4adqG1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: 4-helical cytokines (From Topology) | T: 4-helical cytokines | F: PF05337 | ECOD (1.6) |
H | PF05337 | e4adqH1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: 4-helical cytokines (From Topology) | T: 4-helical cytokines | F: PF05337 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Secreted protein BARF1 | 1V-1C-LIKE | Homo sapiens (human) | BARF1 | V-LIKE-DOMAIN V-LIKE, C-LIKE-DOMAIN C-LIKE | RPI | 1V-1C-LIKE | IMGT (202428-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22305 | BARF1 second Ig-like domain (BARF1_ig2) | BARF1 second Ig-like domain | This entry represents the second Immunoglobulin-like domain present in the BARF1 protein from Epstein-Barr virus [1,2,3]. | Domain | |
PF05337 | Macrophage colony stimulating factor-1 (CSF-1) (CSF-1) | Macrophage colony stimulating factor-1 (CSF-1) | Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mono ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR007110 | Immunoglobulin-like domain | Domain | |
IPR008001 | Macrophage colony stimulating factor-1 | Family | |
IPR009079 | Four-helical cytokine-like, core | Homologous Superfamily |