4Z42
Crystal structure of urease from Yersinia enterocolitica
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Urease, gamma-subunit | 8078158 | 4000909 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Urease, gamma-subunit | 8078159 | 3001945 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Urease, gamma-subunit | 8078159 | 3001945 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Urease, gamma-subunit | 8078159 | 3001945 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Urease, gamma-subunit | 8078159 | 3001945 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Urease_beta | e4z42B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Urease, beta-subunit (From Topology) | T: Urease, beta-subunit | F: Urease_beta | ECOD (1.6) |
E | Urease_beta | e4z42E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Urease, beta-subunit (From Topology) | T: Urease, beta-subunit | F: Urease_beta | ECOD (1.6) |
H | Urease_beta | e4z42H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Urease, beta-subunit (From Topology) | T: Urease, beta-subunit | F: Urease_beta | ECOD (1.6) |
K | Urease_beta | e4z42K1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Urease, beta-subunit (From Topology) | T: Urease, beta-subunit | F: Urease_beta | ECOD (1.6) |
C | Urease_alpha | e4z42C1 | A: beta sandwiches | X: Composite domain of metallo-dependent hydrolases (From Topology) | H: Composite domain of metallo-dependent hydrolases (From Topology) | T: Composite domain of metallo-dependent hydrolases | F: Urease_alpha | ECOD (1.6) |
C | Amidohydro_1_N | e4z42C2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_1_N | ECOD (1.6) |
F | Urease_alpha | e4z42F1 | A: beta sandwiches | X: Composite domain of metallo-dependent hydrolases (From Topology) | H: Composite domain of metallo-dependent hydrolases (From Topology) | T: Composite domain of metallo-dependent hydrolases | F: Urease_alpha | ECOD (1.6) |
F | Amidohydro_1_N | e4z42F2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_1_N | ECOD (1.6) |
I | Urease_alpha | e4z42I1 | A: beta sandwiches | X: Composite domain of metallo-dependent hydrolases (From Topology) | H: Composite domain of metallo-dependent hydrolases (From Topology) | T: Composite domain of metallo-dependent hydrolases | F: Urease_alpha | ECOD (1.6) |
I | Amidohydro_1_N | e4z42I2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_1_N | ECOD (1.6) |
L | Urease_alpha | e4z42L2 | A: beta sandwiches | X: Composite domain of metallo-dependent hydrolases (From Topology) | H: Composite domain of metallo-dependent hydrolases (From Topology) | T: Composite domain of metallo-dependent hydrolases | F: Urease_alpha | ECOD (1.6) |
L | Amidohydro_1_N | e4z42L1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Amidohydro_1_N | ECOD (1.6) |
A | Urease_gamma | e4z42A1 | A: a+b two layers | X: Urease, gamma-subunit (From Topology) | H: Urease, gamma-subunit (From Topology) | T: Urease, gamma-subunit | F: Urease_gamma | ECOD (1.6) |
D | Urease_gamma | e4z42D1 | A: a+b two layers | X: Urease, gamma-subunit (From Topology) | H: Urease, gamma-subunit (From Topology) | T: Urease, gamma-subunit | F: Urease_gamma | ECOD (1.6) |
G | Urease_gamma | e4z42G1 | A: a+b two layers | X: Urease, gamma-subunit (From Topology) | H: Urease, gamma-subunit (From Topology) | T: Urease, gamma-subunit | F: Urease_gamma | ECOD (1.6) |
J | Urease_gamma | e4z42J1 | A: a+b two layers | X: Urease, gamma-subunit (From Topology) | H: Urease, gamma-subunit (From Topology) | T: Urease, gamma-subunit | F: Urease_gamma | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00699 | Urease beta subunit (Urease_beta) | Urease beta subunit | This subunit is known as alpha in Heliobacter. | Domain | |
PF00449 | Urease alpha-subunit, N-terminal domain (Urease_alpha) | Urease alpha-subunit, N-terminal domain | The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit. | Domain | |
PF01979 | Amidohydrolase family (Amidohydro_1) | Amidohydrolase family | This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ... | Domain | |
PF00547 | Urease, gamma subunit (Urease_gamma) | Urease, gamma subunit | Urease is a nickel-binding enzyme that catalyses the hydrolysis of urea to carbon dioxide and ammonia. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002019 | Urease, beta subunit-like | Family | |
IPR050069 | Urease subunit | Family | |
IPR036461 | Urease, beta subunit superfamily | Homologous Superfamily | |
IPR029754 | Urease nickel binding site | Binding Site | |
IPR017950 | Urease active site | Active Site | |
IPR006680 | Amidohydrolase-related | Domain | |
IPR011059 | Metal-dependent hydrolase, composite domain superfamily | Homologous Superfamily | |
IPR032466 | Metal-dependent hydrolase | Homologous Superfamily | |
IPR011612 | Urease alpha-subunit, N-terminal domain | Domain | |
IPR050112 | Urease Alpha Subunit | Family | |
IPR005848 | Urease, alpha subunit | Family | |
IPR017951 | Urease alpha subunit, C-terminal | Domain | |
IPR050069 | Urease subunit | Family | |
IPR012010 | Urease, gamma subunit | Family | |
IPR002026 | Urease, gamma/gamma-beta subunit | Family | |
IPR036463 | Urease, gamma subunit superfamily | Homologous Superfamily |