Skip to main content

 4YS6 | pdb_00004ys6

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS (Cphy_1585, TARGET EFI-511156) WITH BOUND BETA-D-GLUCOSE

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4ys6a_ Alpha and beta proteins (a/b) Periplasmic binding protein-like I Periplasmic binding protein-like I automated matches automated matches (Lachnoclostridium phytofermentans ISDg ) [TaxId: 357809 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyL-arabinose binding protein-like 8097209 4000206 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyType 1 solute binding protein-like 8097210 3000125 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APOLH-Rev1_HhHe4ys6A1 A: alpha arraysX: amino-terminal domain of OmpATbH: amino-terminal domain of OmpATbT: amino-terminal domain of OmpATbF: POLH-Rev1_HhHECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF13407Periplasmic binding protein domain (Peripla_BP_4)Periplasmic binding protein domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Putative solute-binding component of ABC transporter -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR049784Multiple sugar-binding periplasmic receptor ChvE-likeFamily
IPR025997Periplasmic binding proteinDomain
IPR028082Periplasmic binding protein-like IHomologous Superfamily
IPR050555Bacterial Solute-Binding Protein 2Family