4Y7J
Structure of an archaeal mechanosensitive channel in expanded state
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Gated mechanosensitive channel | 8100254 | 3000492 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Gated mechanosensitive channel | 8100254 | 3000492 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Gated mechanosensitive channel | 8100254 | 3000492 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Gated mechanosensitive channel | 8100254 | 3000492 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DMRL_synthase | e4y7jA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Lumazine synthase | F: DMRL_synthase | ECOD (1.6) |
A | MscL | e4y7jA2 | A: extended segments | X: Gated mechanosensitive channel (From Topology) | H: Gated mechanosensitive channel (From Topology) | T: Gated mechanosensitive channel | F: MscL | ECOD (1.6) |
B | DMRL_synthase | e4y7jB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Lumazine synthase | F: DMRL_synthase | ECOD (1.6) |
B | MscL | e4y7jB2 | A: extended segments | X: Gated mechanosensitive channel (From Topology) | H: Gated mechanosensitive channel (From Topology) | T: Gated mechanosensitive channel | F: MscL | ECOD (1.6) |
C | DMRL_synthase | e4y7jC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Lumazine synthase | F: DMRL_synthase | ECOD (1.6) |
C | MscL | e4y7jC2 | A: extended segments | X: Gated mechanosensitive channel (From Topology) | H: Gated mechanosensitive channel (From Topology) | T: Gated mechanosensitive channel | F: MscL | ECOD (1.6) |
D | DMRL_synthase | e4y7jD1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Lumazine synthase | F: DMRL_synthase | ECOD (1.6) |
D | MscL | e4y7jD2 | A: extended segments | X: Gated mechanosensitive channel (From Topology) | H: Gated mechanosensitive channel (From Topology) | T: Gated mechanosensitive channel | F: MscL | ECOD (1.6) |
E | DMRL_synthase | e4y7jE1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Lumazine synthase | F: DMRL_synthase | ECOD (1.6) |
E | MscL | e4y7jE2 | A: extended segments | X: Gated mechanosensitive channel (From Topology) | H: Gated mechanosensitive channel (From Topology) | T: Gated mechanosensitive channel | F: MscL | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00885 | 6,7-dimethyl-8-ribityllumazine synthase (DMRL_synthase) | 6,7-dimethyl-8-ribityllumazine synthase | This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function f ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006399 | Riboflavin synthase, archaeal | Family | |
IPR036467 | Lumazine/riboflavin synthase superfamily | Homologous Superfamily | |
IPR002180 | Lumazine/riboflavin synthase | Family | |
IPR037673 | Large-conductance mechanosensitive channel/anditomin synthesis protein L | Family | |
IPR036019 | Large-conductance mechanosensitive channel MscL | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Mechanosensitive | MscL mechanosensitive channel in closed state |