4XPJ
Crystal structure of Nerve growth factor in complex with lysophosphatidylinositol
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4xpja_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Neurotrophin | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d4xpjb_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Neurotrophin | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | NGF | e4xpjA1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: NGF | ECOD (1.6) |
B | NGF | e4xpjB1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: NGF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
B | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
IPR002072 | Nerve growth factor-related | Domain | |
IPR020408 | Nerve growth factor-like | Family | |
IPR019846 | Nerve growth factor conserved site | Conserved Site | |
IPR020437 | Nerve growth factor, beta subunit, mammalian | Family | |
IPR020425 | Nerve growth factor, beta subunit | Family |