4WSH
Crystal structure of Probable Uroporphyrinogen decarboxylase (UPD) (URO-D) from Pseudomonas aeruginosa
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4wsha_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | UROD/MetE-like | Uroporphyrinogen decarboxylase, UROD | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
B | d4wshb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | UROD/MetE-like | Uroporphyrinogen decarboxylase, UROD | automated matches | (Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Uroporphyrinogen decarboxylase, UROD | 8072664 | 4003345 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | UROD/MetE-like | 8072665 | 3000657 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | UROD/MetE-like | 8072665 | 3000657 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | URO-D | e4wshA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: URO-D | ECOD (1.6) |
B | URO-D | e4wshB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: URO-D | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.210 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | CATH (4.3.0) | |
B | 3.20.20.210 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01208 | Uroporphyrinogen decarboxylase (URO-D) (URO-D) | Uroporphyrinogen decarboxylase (URO-D) | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006361 | Uroporphyrinogen decarboxylase HemE | Family | |
IPR038071 | UROD/MetE-like superfamily | Homologous Superfamily | |
IPR000257 | Uroporphyrinogen decarboxylase (URO-D) | Domain |