4WA8
Methanopyrus Kandleri FEN-1 nuclease
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4wa8a2 | All alpha proteins | SAM domain-like | 5' to 3' exonuclease, C-terminal subdomain | automated matches | automated matches | (Methanopyrus kandleri AV19 ) [TaxId: 190192 ], | SCOPe (2.08) |
A | d4wa8a1 | Alpha and beta proteins (a/b) | PIN domain-like | PIN domain-like | automated matches | automated matches | (Methanopyrus kandleri AV19 ) [TaxId: 190192 ], | SCOPe (2.08) |
B | d4wa8b1 | All alpha proteins | SAM domain-like | 5' to 3' exonuclease, C-terminal subdomain | automated matches | automated matches | (Methanopyrus kandleri AV19 ) [TaxId: 190192 ], | SCOPe (2.08) |
B | d4wa8b2 | Alpha and beta proteins (a/b) | PIN domain-like | PIN domain-like | automated matches | automated matches | (Methanopyrus kandleri AV19 ) [TaxId: 190192 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | 5_3_exonuc_1 | e4wa8A1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: 5_3_exonuc_1 | ECOD (1.6) |
A | XPG_I | e4wa8A2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: XPG_I | ECOD (1.6) |
B | 5_3_exonuc_1 | e4wa8B1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: 5_3_exonuc_1 | ECOD (1.6) |
B | XPG_I | e4wa8B2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: XPG_I | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00867 | XPG I-region (XPG_I) | XPG I-region | - | Family | |
PF00752 | XPG N-terminal domain (XPG_N) | XPG N-terminal domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006086 | XPG-I domain | Domain | |
IPR023426 | Flap endonuclease 1 | Family | |
IPR029060 | PIN-like domain superfamily | Homologous Superfamily | |
IPR036279 | 5'-3' exonuclease, C-terminal domain superfamily | Homologous Superfamily | |
IPR008918 | Helix-hairpin-helix motif, class 2 | Conserved Site | |
IPR019974 | XPG conserved site | Conserved Site | |
IPR006085 | XPG, N-terminal | Domain | |
IPR019973 | Flap endonuclease, archaea | Family | |
IPR006084 | XPG/Rad2 endonuclease | Family |