4W5B
Crystal structure analysis of cruzain with Fragment 1 (N-(1H-benzimidazol-2-yl)-1,3-dimethyl-pyrazole-4-carboxamide)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4w5ba_ | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Papain-like | Cruzain | (Trypanosoma cruzi ) [TaxId: 5693 ], | SCOPe (2.08) |
B | d4w5bb_ | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Papain-like | Cruzain | (Trypanosoma cruzi ) [TaxId: 5693 ], | SCOPe (2.08) |
C | d4w5bc_ | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Papain-like | Cruzain | (Trypanosoma cruzi ) [TaxId: 5693 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cysteine proteinases | 8043440 | 3001808 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cysteine proteinases | 8043440 | 3001808 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cysteine proteinases | 8043440 | 3001808 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00112 | e4w5bA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00112 | ECOD (1.6) |
B | PF00112 | e4w5bB1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00112 | ECOD (1.6) |
C | PF00112 | e4w5bC1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: PF00112 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.70.10 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
B | 3.90.70.10 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
C | 3.90.70.10 | Alpha Beta | Alpha-Beta Complex | Cathepsin B | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00112 | Papain family cysteine protease (Peptidase_C1) | Papain family cysteine protease | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR021981 | Domain of unknown function DUF3586 | Domain | |
IPR025661 | Cysteine peptidase, asparagine active site | Active Site | |
IPR000169 | Cysteine peptidase, cysteine active site | Active Site | |
IPR013128 | Peptidase C1A | Family | |
IPR000668 | Peptidase C1A, papain C-terminal | Domain | |
IPR013201 | Cathepsin propeptide inhibitor domain (I29) | Domain | |
IPR038765 | Papain-like cysteine peptidase superfamily | Homologous Superfamily | |
IPR025660 | Cysteine peptidase, histidine active site | Active Site | |
IPR039417 | Papain-like cysteine endopeptidase | Domain |