Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth AM] | SCOP2B Superfamily | S13-like H2TH domain | 8003708 | 3000053 | SCOP2B (2022-06-29) |
| H [auth AN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052585 | 3000068 | SCOP2B (2022-06-29) |
| K [auth AQ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044026 | 3000135 | SCOP2B (2022-06-29) |
| N [auth AT] | SCOP2B Superfamily | Ribosomal protein S20 | 8044029 | 3001362 | SCOP2B (2022-06-29) |
| O [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8044010 | 3001397 | SCOP2B (2022-06-29) |
| P [auth AC] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8044011 | 3001043 | SCOP2B (2022-06-29) |
| P [auth AC] | SCOP2B Superfamily | Ribosomal protein S3 C-terminal domain | 8044012 | 3001053 | SCOP2B (2022-06-29) |
| Q [auth AD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8044014 | 3001473 | SCOP2B (2022-06-29) |
| R [auth AE] | SCOP2B Superfamily | dsRNA-binding domain-like | 8044017 | 3000985 | SCOP2B (2022-06-29) |
| R [auth AE] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8044015 | 3000100 | SCOP2B (2022-06-29) |
| V [auth AI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8037678 | 3000100 | SCOP2B (2022-06-29) |
| AA [auth BN] | SCOP2B Superfamily | Ribosomal protein L13 | 8033205 | 3001134 | SCOP2B (2022-06-29) |
| BA [auth BO] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8042936 | 3000433 | SCOP2B (2022-06-29) |
| CA [auth BP] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8033207 | 3001045 | SCOP2B (2022-06-29) |
| DA [auth BQ] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8043627 | 3000884 | SCOP2B (2022-06-29) |
| JA [auth BW] | SCOP2B Superfamily | Ribosomal protein L22 | 8033220 | 3001078 | SCOP2B (2022-06-29) |
| KA [auth BX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8033219 | 3000210 | SCOP2B (2022-06-29) |
| LA [auth BY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033223 | 3000334 | SCOP2B (2022-06-29) |
| NA [auth B0] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8041210 | 3000539 | SCOP2B (2022-06-29) |
| OA [auth B1] | SCOP2B Superfamily | L28p-like | 8042932 | 3001966 | SCOP2B (2022-06-29) |
| PA [auth B2] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8042933 | 3000713 | SCOP2B (2022-06-29) |
| TA [auth B5] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8033190 | 3001320 | SCOP2B (2022-06-29) |
| UA [auth B6] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8033191 | 3001320 | SCOP2B (2022-06-29) |
| WA [auth B8] | SCOP2B Superfamily | L35p-like | 8033192 | 3000790 | SCOP2B (2022-06-29) |
| ZA [auth BE] | SCOP2B Superfamily | Translational proteins | 8033197 | 3000811 | SCOP2B (2022-06-29) |
| AB [auth BF] | SCOP2B Superfamily | Ribosomal protein L4 | 8033198 | 3001146 | SCOP2B (2022-06-29) |
| F [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8044021 | 3000135 | SCOP2B (2022-06-29) |
| CB [auth BH] | SCOP2B Superfamily | Ribosomal protein L6 | 8033202 | 3000724 | SCOP2B (2022-06-29) |
| CB [auth BH] | SCOP2B Superfamily | Ribosomal protein L6 | 8033203 | 3000724 | SCOP2B (2022-06-29) |
| E [auth AK] | SCOP2B Superfamily | Translational machinery components | 8044020 | 3000571 | SCOP2B (2022-06-29) |
| QA [auth BD] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8033195 | 3000135 | SCOP2B (2022-06-29) |
| QA [auth BD] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033194 | 3000334 | SCOP2B (2022-06-29) |
| D [auth AJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8044019 | 3001336 | SCOP2B (2022-06-29) |
| IA [auth BV] | SCOP2B Superfamily | l21p-like | 8033218 | 3002005 | SCOP2B (2022-06-29) |
| HA [auth BU] | SCOP2B Superfamily | Ribosomal protein L20 | 8033216 | 3000563 | SCOP2B (2022-06-29) |
| GA [auth BT] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8033214 | 3000334 | SCOP2B (2022-06-29) |
| FA [auth BS] | SCOP2B Superfamily | Translational machinery components | 8033211 | 3000571 | SCOP2B (2022-06-29) |
| EA [auth BR] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8032744 | 3000995 | SCOP2B (2022-06-29) |
| T [auth AG] | SCOP2B Superfamily | Ribosomal protein S7 | 8033523 | 3000799 | SCOP2B (2022-06-29) |
| M [auth AS] | SCOP2B Superfamily | Ribosomal protein S19 | 8044027 | 3000686 | SCOP2B (2022-06-29) |
| L [auth AR] | SCOP2B Superfamily | Ribosomal protein S18 | 8044028 | 3001191 | SCOP2B (2022-06-29) |
| J [auth AP] | SCOP2B Superfamily | Ribosomal protein S16 | 8044025 | 3000680 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G [auth AM] | Cellulase | e4v9hAM1 | A: beta barrels | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.2) |
| H [auth AN] | TTL, ATPgrasp_YheCD | e4v9hAN1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| I [auth AO] | TTL, ATPgrasp_YheCD | e4v9hAO1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| K [auth AQ] | Cellulase | e4v9hAQ1 | A: beta barrels | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.2) |
| N [auth AT] | TTL, ATPgrasp_YheCD | e4v9hAT1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| O [auth AB] | FlaF_Ig-like | e4v9hAB1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.2) |
| P [auth AC] | TTL, ATPgrasp_YheCD | e4v9hAC1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| Q [auth AD] | FlaF_Ig-like | e4v9hAD1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.2) |
| R [auth AE] | TTL, ATPgrasp_YheCD | e4v9hAE1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| U [auth AH] | TTL, ATPgrasp_YheCD | e4v9hAH1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| V [auth AI] | FlaF_Ig-like | e4v9hAI1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.2) |
| AA [auth BN] | TTL, ATPgrasp_YheCD | e4v9hBN1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| BA [auth BO] | TTL, ATPgrasp_YheCD | e4v9hBO1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| CA [auth BP] | PemK_toxin | e4v9hBP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| DA [auth BQ] | PemK_toxin | e4v9hBQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| JA [auth BW] | TTL, ATPgrasp_YheCD | e4v9hBW1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| KA [auth BX] | TTL, ATPgrasp_YheCD | e4v9hBX1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| LA [auth BY] | TTL, ATPgrasp_YheCD | e4v9hBY1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| MA [auth BZ] | TTL, ATPgrasp_YheCD | e4v9hBZ1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| NA [auth B0] | TTL, ATPgrasp_YheCD | e4v9hB01 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| OA [auth B1] | TTL, ATPgrasp_YheCD | e4v9hB11 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| PA [auth B2] | TTL, ATPgrasp_YheCD | e4v9hB21 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| RA [auth B3] | TTL, ATPgrasp_YheCD | e4v9hB31 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| SA [auth B4] | TTL, ATPgrasp_YheCD | e4v9hB41 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| TA [auth B5] | TTL, ATPgrasp_YheCD | e4v9hB51 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| UA [auth B6] | TTL, ATPgrasp_YheCD | e4v9hB61 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| WA [auth B8] | TTL, ATPgrasp_YheCD | e4v9hB81 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| XA [auth B9] | TTL, ATPgrasp_YheCD | e4v9hB91 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| YA [auth BC] | TTL, ATPgrasp_YheCD | e4v9hBC1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| ZA [auth BE] | PemK_toxin | e4v9hBE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| AB [auth BF] | TTL, ATPgrasp_YheCD | e4v9hBF1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| BB [auth BG] | TTL, ATPgrasp_YheCD | e4v9hBG1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| DB [auth BK] | TTL, ATPgrasp_YheCD | e4v9hBK1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| F [auth AL] | TTL, ATPgrasp_YheCD | e4v9hAL1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| CB [auth BH] | TTL, ATPgrasp_YheCD | e4v9hBH1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| E [auth AK] | TTL, ATPgrasp_YheCD | e4v9hAK1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| VA [auth B7] | TTL, ATPgrasp_YheCD | e4v9hB71 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| QA [auth BD] | TTL, ATPgrasp_YheCD | e4v9hBD1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| D [auth AJ] | TTL, ATPgrasp_YheCD | e4v9hAJ1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| IA [auth BV] | TTL, ATPgrasp_YheCD | e4v9hBV1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| HA [auth BU] | TTL, ATPgrasp_YheCD | e4v9hBU1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| GA [auth BT] | Ribosomal_L19 | e4v9hBT1 | A: beta barrels | X: Repetitive alpha hairpins | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.2) |
| FA [auth BS] | PemK_toxin | e4v9hBS1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| EA [auth BR] | TTL, ATPgrasp_YheCD | e4v9hBR1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| W [auth AY] | TTL, ATPgrasp_YheCD | e4v9hAY1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| T [auth AG] | TTL, ATPgrasp_YheCD | e4v9hAG1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| S [auth AF] | TTL, ATPgrasp_YheCD | e4v9hAF1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| M [auth AS] | Cellulase | e4v9hAS1 | A: beta barrels | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.2) |
| L [auth AR] | TTL, ATPgrasp_YheCD | e4v9hAR1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| J [auth AP] | TTL, ATPgrasp_YheCD | e4v9hAP1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| G [auth AM] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| H [auth AN] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| I [auth AO] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| K [auth AQ] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| N [auth AT] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| O [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| P [auth AC] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| P [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| Q [auth AD] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| Q [auth AD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| R [auth AE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| R [auth AE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| U [auth AH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| V [auth AI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| X [auth AU] | PF17070 | 30S ribosomal protein Thx (Thx) | 30S ribosomal protein Thx | - | Family |
| AA [auth BN] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| BA [auth BO] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| CA [auth BP] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| DA [auth BQ] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| JA [auth BW] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| KA [auth BX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| LA [auth BY] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| LA [auth BY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| MA [auth BZ] | PF14693 | Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) | Ribosomal protein TL5, C-terminal domain | This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... | Domain |
| MA [auth BZ] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| NA [auth B0] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| OA [auth B1] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| PA [auth B2] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| RA [auth B3] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| TA [auth B5] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| WA [auth B8] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| YA [auth BC] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| ZA [auth BE] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| AB [auth BF] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| BB [auth BG] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| BB [auth BG] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| DB [auth BK] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| DB [auth BK] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| F [auth AL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| CB [auth BH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| E [auth AK] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| VA [auth B7] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| QA [auth BD] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| QA [auth BD] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| D [auth AJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| IA [auth BV] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| HA [auth BU] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| GA [auth BT] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| EA [auth BR] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| W [auth AY] | PF00679 | Elongation factor G C-terminus (EFG_C) | Elongation factor G C-terminus | This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. | Domain |
| W [auth AY] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| W [auth AY] | PF14492 | Elongation Factor G, domain III (EFG_III) | Elongation Factor G, domain III | This domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. | Domain |
| W [auth AY] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
| W [auth AY] | PF03764 | Elongation factor G, domain IV (EFG_IV) | Elongation factor G, domain IV | This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. | Domain |
| T [auth AG] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| S [auth AF] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| M [auth AS] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| L [auth AR] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| J [auth AP] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |














