4V6W
Structure of the D. melanogaster 80S ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth Ag] | SCOP2 Family | WD40-repeat | 8101472 | 4002744 | SCOP2 (2022-06-29) |
B [auth Ag] | SCOP2 Superfamily | WD40 repeat-like | 8101473 | 3001694 | SCOP2 (2022-06-29) |
C [auth AU] | SCOP2 Family | Ribosomal protein S10 | 8098757 | 4001240 | SCOP2 (2022-06-29) |
C [auth AU] | SCOP2 Superfamily | Ribosomal protein S10 | 8098758 | 3001336 | SCOP2 (2022-06-29) |
D [auth AK] | SCOP2 Family | eS10-like | 8051612 | 4007434 | SCOP2 (2022-06-29) |
D [auth AK] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8055715 | 3000034 | SCOP2 (2022-06-29) |
E [auth AO] | SCOP2 Family | Ribosomal protein L18p and S11 | 8097359 | 4000555 | SCOP2 (2022-06-29) |
E [auth AO] | SCOP2 Superfamily | Translational machinery components | 8097360 | 3000571 | SCOP2 (2022-06-29) |
G [auth AM] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8063975 | 4001513 | SCOP2 (2022-06-29) |
G [auth AM] | SCOP2 Superfamily | L30e-like | 8063976 | 3001739 | SCOP2 (2022-06-29) |
H [auth AS] | SCOP2 Family | Ribosomal protein S13 | 8098675 | 4000260 | SCOP2 (2022-06-29) |
H [auth AS] | SCOP2 Superfamily | S13-like H2TH domain | 8098676 | 3000053 | SCOP2 (2022-06-29) |
I [auth Ad] | SCOP2 Family | Ribosomal protein S14p/S29e | 8047587 | 4003647 | SCOP2 (2022-06-29) |
I [auth Ad] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052593 | 3000068 | SCOP2 (2022-06-29) |
J [auth AN] | SCOP2 Family | 40S Ribosomal protein S13, N-terminal domain-like | 8050316 | 4006843 | SCOP2 (2022-06-29) |
J [auth AN] | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8052945 | 4000767 | SCOP2 (2022-06-29) |
J [auth AN] | SCOP2 Superfamily | Homeodomain-like | 8052947 | 3000001 | SCOP2 (2022-06-29) |
J [auth AN] | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8052946 | 3001284 | SCOP2 (2022-06-29) |
K [auth AL] | SCOP2 Family | Ribosomal S17 N-terminal domain-like | 8045086 | 4004290 | SCOP2 (2022-06-29) |
K [auth AL] | SCOP2 Family | Cold shock DNA-binding domain-like | 8052722 | 4001909 | SCOP2 (2022-06-29) |
K [auth AL] | SCOP2 Superfamily | Ribosomal S17 N-terminal domain-like | 8052721 | 3002138 | SCOP2 (2022-06-29) |
K [auth AL] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052723 | 3000135 | SCOP2 (2022-06-29) |
N [auth AT] | SCOP2 Family | Rps19E-like | 8089323 | 4000222 | SCOP2 (2022-06-29) |
N [auth AT] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8089324 | 3000034 | SCOP2 (2022-06-29) |
O [auth AB] | SCOP2 Family | Ribosomal S3Ae | 8048448 | 4006095 | SCOP2 (2022-06-29) |
O [auth AB] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8053204 | 3002166 | SCOP2 (2022-06-29) |
P [auth AA] | SCOP2 Family | Ribosomal protein S2-like | 8044910 | 4003744 | SCOP2 (2022-06-29) |
P [auth AA] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8052795 | 3001397 | SCOP2 (2022-06-29) |
Q [auth AV] | SCOP2 Family | Ribosomal protein S21e | 8048779 | 4006215 | SCOP2 (2022-06-29) |
Q [auth AV] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053131 | 3000068 | SCOP2 (2022-06-29) |
S [auth AZ] | SCOP2 Family | Ribosomal protein S25-like | 8051327 | 4007308 | SCOP2 (2022-06-29) |
S [auth AZ] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8090995 | 3000034 | SCOP2 (2022-06-29) |
T [auth Aa] | SCOP2 Family | Ribosomal protein S26e | 8048845 | 4006236 | SCOP2 (2022-06-29) |
T [auth Aa] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053141 | 3000068 | SCOP2 (2022-06-29) |
V [auth Ac] | SCOP2 Family | Cold shock DNA-binding domain-like | 8100701 | 4001909 | SCOP2 (2022-06-29) |
V [auth Ac] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8100702 | 3000135 | SCOP2 (2022-06-29) |
X [auth Ae] | SCOP2 Family | Ribosomal protein S30e-like | 8046417 | 4005067 | SCOP2 (2022-06-29) |
X [auth Ae] | SCOP2 Superfamily | Ribosomal protein S30e-like | 8053457 | 3002190 | SCOP2 (2022-06-29) |
AA [auth AE] | SCOP2 Family | Ribosomal protein S4e, C-terminal KOW domain-like | 8044897 | 4004197 | SCOP2 (2022-06-29) |
AA [auth AE] | SCOP2 Family | Cold shock DNA-binding domain-like | 8048386 | 4001909 | SCOP2 (2022-06-29) |
AA [auth AE] | SCOP2 Family | Eukaryotic ribosomal protein S4e-like | 8050324 | 4006847 | SCOP2 (2022-06-29) |
AA [auth AE] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052763 | 3000334 | SCOP2 (2022-06-29) |
AA [auth AE] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052762 | 3000135 | SCOP2 (2022-06-29) |
AA [auth AE] | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8052761 | 3001473 | SCOP2 (2022-06-29) |
CA [auth AG] | SCOP2 Family | Ribosomal protein S6e | 8048560 | 4006143 | SCOP2 (2022-06-29) |
CA [auth AG] | SCOP2 Superfamily | GS N-terminal domain-like | 8053161 | 3000408 | SCOP2 (2022-06-29) |
DA [auth AF] | SCOP2 Family | Ribosomal protein S7 | 8066006 | 4001112 | SCOP2 (2022-06-29) |
DA [auth AF] | SCOP2 Superfamily | Ribosomal protein S7 | 8066007 | 3000799 | SCOP2 (2022-06-29) |
FA [auth AW] | SCOP2 Family | Ribosomal protein S8 | 8079082 | 4002027 | SCOP2 (2022-06-29) |
FA [auth AW] | SCOP2 Superfamily | Ribosomal protein S8 | 8079083 | 3000709 | SCOP2 (2022-06-29) |
GA [auth AI] | SCOP2 Family | Ribosomal protein S8e | 8048717 | 4006189 | SCOP2 (2022-06-29) |
GA [auth AI] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8053074 | 3000433 | SCOP2 (2022-06-29) |
HA [auth AQ] | SCOP2 Family | Translational machinery components | 8082696 | 4000951 | SCOP2 (2022-06-29) |
HA [auth AQ] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8082697 | 3000100 | SCOP2 (2022-06-29) |
LA [auth Cz] | SCOP2 Family | Ribosomal protein L1p/L10e-like | 8100699 | 4002929 | SCOP2 (2022-06-29) |
LA [auth Cz] | SCOP2 Superfamily | Ribosomal protein L1p/L10e-like | 8100700 | 3001911 | SCOP2 (2022-06-29) |
PA [auth CL] | SCOP2 Family | Ribosomal protein L13e | 8048859 | 4006241 | SCOP2 (2022-06-29) |
PA [auth CL] | SCOP2 Superfamily | Ribosomal protein L13e-like | 8053152 | 3002162 | SCOP2 (2022-06-29) |
QA [auth CV] | SCOP2 Family | Ribosomal protein L14 | 8072043 | 4001826 | SCOP2 (2022-06-29) |
QA [auth CV] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8072044 | 3000433 | SCOP2 (2022-06-29) |
SA [auth Ca] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8098673 | 4003555 | SCOP2 (2022-06-29) |
SA [auth Ca] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8098674 | 3001045 | SCOP2 (2022-06-29) |
TA [auth CN] | SCOP2 Family | L15e | 8082484 | 4000945 | SCOP2 (2022-06-29) |
TA [auth CN] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082485 | 3000210 | SCOP2 (2022-06-29) |
UA [auth CI] | SCOP2 Family | Ribosomal protein L10e | 8098197 | 4001135 | SCOP2 (2022-06-29) |
UA [auth CI] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8098198 | 3000884 | SCOP2 (2022-06-29) |
VA [auth CD] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8049689 | 4006591 | SCOP2 (2022-06-29) |
VA [auth CD] | SCOP2 Superfamily | Translational machinery components | 8052888 | 3000571 | SCOP2 (2022-06-29) |
WA [auth CQ] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8046513 | 4003555 | SCOP2 (2022-06-29) |
WA [auth CQ] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8095978 | 3001045 | SCOP2 (2022-06-29) |
XA [auth CR] | SCOP2 Family | Ribosomal protein L19 (L19e) | 8106239 | 4001138 | SCOP2 (2022-06-29) |
XA [auth CR] | SCOP2 Superfamily | Ribosomal protein L19 (L19e) | 8106240 | 3000890 | SCOP2 (2022-06-29) |
CB [auth CU] | SCOP2 Family | 60S Ribosomal protein L22e | 8049495 | 4006528 | SCOP2 (2022-06-29) |
CB [auth CU] | SCOP2 Superfamily | 60S Ribosomal protein L22e | 8053063 | 3002158 | SCOP2 (2022-06-29) |
DB [auth CX] | SCOP2 Family | L23p | 8045185 | 4000943 | SCOP2 (2022-06-29) |
DB [auth CX] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095968 | 3000210 | SCOP2 (2022-06-29) |
EB [auth CY] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8076761 | 4001752 | SCOP2 (2022-06-29) |
EB [auth CY] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076762 | 3000334 | SCOP2 (2022-06-29) |
GB [auth CZ] | SCOP2 Family | Ribosomal protein L27e | 8049507 | 4006529 | SCOP2 (2022-06-29) |
GB [auth CZ] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053053 | 3000334 | SCOP2 (2022-06-29) |
JB [auth Cb] | SCOP2 Family | Ribosomal protein L29e | 8049529 | 4006531 | SCOP2 (2022-06-29) |
JB [auth Cb] | SCOP2 Superfamily | Ribosomal protein L29e | 8053035 | 3002157 | SCOP2 (2022-06-29) |
KB [auth CB] | SCOP2 Family | Ribosomal protein L3 | 8078358 | 4002103 | SCOP2 (2022-06-29) |
KB [auth CB] | SCOP2 Superfamily | Translational proteins | 8078359 | 3000811 | SCOP2 (2022-06-29) |
LB [auth CF] | SCOP2 Family | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8050352 | 4006854 | SCOP2 (2022-06-29) |
LB [auth CF] | SCOP2 Family | Ribosomal protein L30p/L7e | 8052918 | 4001360 | SCOP2 (2022-06-29) |
LB [auth CF] | SCOP2 Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052919 | 3002152 | SCOP2 (2022-06-29) |
LB [auth CF] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8052920 | 3001378 | SCOP2 (2022-06-29) |
MB [auth Cc] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8100695 | 4001513 | SCOP2 (2022-06-29) |
MB [auth Cc] | SCOP2 Superfamily | L30e-like | 8100696 | 3001739 | SCOP2 (2022-06-29) |
OB [auth Ce] | SCOP2 Family | Ribosomal protein L32e | 8102406 | 4003517 | SCOP2 (2022-06-29) |
OB [auth Ce] | SCOP2 Superfamily | Ribosomal protein L32e | 8102407 | 3000982 | SCOP2 (2022-06-29) |
QB [auth Cg] | SCOP2 Family | Ribosomal protein L34e-like | 8048735 | 4006193 | SCOP2 (2022-06-29) |
QB [auth Cg] | SCOP2 Superfamily | Ribosomal protein L34e-like | 8053537 | 3002203 | SCOP2 (2022-06-29) |
RB [auth Ci] | SCOP2 Family | Ribosomal protein L36e | 8048629 | 4006168 | SCOP2 (2022-06-29) |
RB [auth Ci] | SCOP2 Superfamily | Ribosomal protein L36e | 8053114 | 3002161 | SCOP2 (2022-06-29) |
TB [auth Ck] | SCOP2 Family | Ribosomal L38e protein-like | 8049539 | 4006532 | SCOP2 (2022-06-29) |
TB [auth Ck] | SCOP2 Superfamily | Ribosomal L38e protein-like | 8053566 | 3002206 | SCOP2 (2022-06-29) |
UB [auth Cl] | SCOP2 Family | ribosomal protein l39e | 8098119 | 4001518 | SCOP2 (2022-06-29) |
UB [auth Cl] | SCOP2 Superfamily | Ribosomal protein L39e | 8098120 | 3001756 | SCOP2 (2022-06-29) |
VB [auth CC] | SCOP2 Family | 60S ribosomal protein L4 C-terminal domain-like | 8049949 | 4006700 | SCOP2 (2022-06-29) |
VB [auth CC] | SCOP2 Family | Ribosomal protein L4 | 8052811 | 4003628 | SCOP2 (2022-06-29) |
VB [auth CC] | SCOP2 Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052812 | 3002143 | SCOP2 (2022-06-29) |
VB [auth CC] | SCOP2 Superfamily | Ribosomal protein L4 | 8052813 | 3001146 | SCOP2 (2022-06-29) |
WB [auth Cm] | SCOP2 Family | Ribosomal protein L40e | 8101526 | 4002847 | SCOP2 (2022-06-29) |
WB [auth Cm] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8101527 | 3001320 | SCOP2 (2022-06-29) |
YB [auth Cp] | SCOP2 Family | Ribosomal protein L37ae | 8101752 | 4003704 | SCOP2 (2022-06-29) |
YB [auth Cp] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8101753 | 3001320 | SCOP2 (2022-06-29) |
AC [auth CJ] | SCOP2 Family | Ribosomal protein L5 | 8077502 | 4001498 | SCOP2 (2022-06-29) |
AC [auth CJ] | SCOP2 Superfamily | RL5-like | 8077503 | 3001709 | SCOP2 (2022-06-29) |
CC [auth CE] | SCOP2 Family | Ribosomal protein L6e, N-terminal domain | 8045045 | 4004275 | SCOP2 (2022-06-29) |
CC [auth CE] | SCOP2 Family | Ribosomal protein L6e | 8048642 | 4006169 | SCOP2 (2022-06-29) |
CC [auth CE] | SCOP2 Superfamily | Ribosomal protein L6e, N-terminal domain | 8053094 | 3002160 | SCOP2 (2022-06-29) |
CC [auth CE] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053095 | 3000334 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth Az] | PF03144 | e4v6wAz4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
A [auth Az] | PF03764 | e4v6wAz3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03764 | ECOD (1.6) |
A [auth Az] | PF00679 | e4v6wAz1 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: PF00679 | ECOD (1.6) |
A [auth Az] | PF14492 | e4v6wAz5 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: PF14492 | ECOD (1.6) |
A [auth Az] | PF00009 | e4v6wAz2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
B [auth Ag] | PF00400 | e4v6wAg1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
C [auth AU] | PF00338 | e4v6wAU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
D [auth AK] | PF03501 | e4v6wAK1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03501 | ECOD (1.6) |
E [auth AO] | PF00411 | e4v6wAO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
F [auth AX] | PF00164 | e4v6wAX1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
G [auth AM] | PF01248 | e4v6wAM1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
H [auth AS] | PF00416 | e4v6wAS1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
I [auth Ad] | PF00253 | e4v6wAd1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
J [auth AN] | PF08069 | e4v6wAN1 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: PF08069 | ECOD (1.6) |
J [auth AN] | PF00312 | e4v6wAN2 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
K [auth AL] | PF00366,PF16205 | e4v6wAL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366,PF16205 | ECOD (1.6) |
L [auth AR] | PF00833 | e4v6wAR1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
M [auth AP] | PF00203 | e4v6wAP1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
N [auth AT] | PF01090 | e4v6wAT1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
O [auth AB] | PF01015 | e4v6wAB2 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: PF01015 | ECOD (1.6) |
O [auth AB] | PF01015 | e4v6wAB1 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: PF01015 | ECOD (1.6) |
P [auth AA] | PF00318,PF16122 | e4v6wAA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318,PF16122 | ECOD (1.6) |
Q [auth AV] | PF01249 | e4v6wAV1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: PF01249 | ECOD (1.6) |
R [auth AY] | PF01282 | e4v6wAY1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF01282 | ECOD (1.6) |
S [auth AZ] | PF03297 | e4v6wAZ1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03297 | ECOD (1.6) |
T [auth Aa] | PF01283 | e4v6wAa1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01283 | ECOD (1.6) |
U [auth Ab] | PF01667 | e4v6wAb1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01667 | ECOD (1.6) |
V [auth Ac] | PF01200 | e4v6wAc1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
W [auth AD] | PF00189 | e4v6wAD1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
W [auth AD] | PF07650 | e4v6wAD2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
X [auth Ae] | PF04758 | e4v6wAe1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: PF04758 | ECOD (1.6) |
Y [auth Af] | PF01599 | e4v6wAf1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01599 | ECOD (1.6) |
Z [auth AJ] | PF00163,PF01479 | e4v6wAJ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
AA [auth AE] | PF00900 | e4v6wAE1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00900 | ECOD (1.6) |
AA [auth AE] | PF00467,PF16121 | e4v6wAE3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF16121 | ECOD (1.6) |
AA [auth AE] | PF01479,PF08071 | e4v6wAE2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF01479,PF08071 | ECOD (1.6) |
BA [auth AC] | PF03719 | e4v6wAC3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
BA [auth AC] | PF00333 | e4v6wAC2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
BA [auth AC] | PF00333 | e4v6wAC1 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: PF00333 | ECOD (1.6) |
CA [auth AG] | PF01092 | e4v6wAG1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01092 | ECOD (1.6) |
DA [auth AF] | PF00177 | e4v6wAF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
EA [auth AH] | PF01251 | e4v6wAH1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: PF01251 | ECOD (1.6) |
FA [auth AW] | PF00410 | e4v6wAW1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
FA [auth AW] | PF00410 | e4v6wAW2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
GA [auth AI] | PF01201 | e4v6wAI1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF01201 | ECOD (1.6) |
HA [auth AQ] | PF00380 | e4v6wAQ1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
LA [auth Cz] | PF00687 | e4v6wCz1 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: PF00687 | ECOD (1.6) |
LA [auth Cz] | PF00687 | e4v6wCz2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: PF00687 | ECOD (1.6) |
MA [auth Cq] | PF00466 | e4v6wCq3 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
MA [auth Cq] | PF17777 | e4v6wCq2 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: PF17777 | ECOD (1.6) |
NA [auth CK] | PF00298 | e4v6wCK1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
NA [auth CK] | PF03946 | e4v6wCK2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
OA [auth CO] | PF00572 | e4v6wCO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
PA [auth CL] | PF01294 | e4v6wCL1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: PF01294 | ECOD (1.6) |
QA [auth CV] | PF00238 | e4v6wCV1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
RA [auth CM] | PF01929 | e4v6wCM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01929 | ECOD (1.6) |
SA [auth Ca] | PF00828 | e4v6wCa1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
TA [auth CN] | PF00827 | e4v6wCN1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
UA [auth CI] | PF00252 | e4v6wCI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
VA [auth CD] | PF14204,PF17144 | e4v6wCD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF14204,PF17144 | ECOD (1.6) |
WA [auth CQ] | PF17135 | e4v6wCQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
XA [auth CR] | PF01280 | e4v6wCR1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
XA [auth CR] | PF01280 | e4v6wCR2 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
YA [auth CA] | PF00181 | e4v6wCA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
YA [auth CA] | PF03947 | e4v6wCA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
ZA [auth CS] | F_UNCLASSIFIED | e4v6wCS2 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: F_UNCLASSIFIED | ECOD (1.6) |
ZA [auth CS] | PF01775 | e4v6wCS1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
AB [auth CT] | PF01157 | e4v6wCT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
BB [auth CP] | PF00237 | e4v6wCP1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
CB [auth CU] | PF01776 | e4v6wCU1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: PF01776 | ECOD (1.6) |
DB [auth CX] | PF00276,PF03939 | e4v6wCX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276,PF03939 | ECOD (1.6) |
EB [auth CY] | PF16906 | e4v6wCY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
FB [auth CW] | PF01246 | e4v6wCW1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01246 | ECOD (1.6) |
GB [auth CZ] | PF00467,PF01777 | e4v6wCZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01777 | ECOD (1.6) |
HB [auth Cr] | PF01778 | e4v6wCr1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: PF01778 | ECOD (1.6) |
IB [auth Ch] | PF00831 | e4v6wCh1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
JB [auth Cb] | PF01779 | e4v6wCb1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: PF01779 | ECOD (1.6) |
KB [auth CB] | PF00297 | e4v6wCB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
LB [auth CF] | PF00327,PF08079 | e4v6wCF1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327,PF08079 | ECOD (1.6) |
MB [auth Cc] | PF01248 | e4v6wCc1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
NB [auth Cd] | PF01198 | e4v6wCd1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF01198 | ECOD (1.6) |
OB [auth Ce] | PF01655 | e4v6wCe1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
QB [auth Cg] | PF01199 | e4v6wCg1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: PF01199 | ECOD (1.6) |
RB [auth Ci] | PF01158 | e4v6wCi1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: PF01158 | ECOD (1.6) |
SB [auth Cj] | PF01907 | e4v6wCj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
TB [auth Ck] | PF01781 | e4v6wCk1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF01781 | ECOD (1.6) |
UB [auth Cl] | PF00832 | e4v6wCl1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: PF00832 | ECOD (1.6) |
VB [auth CC] | PF00573,PF14374 | e4v6wCC2 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573,PF14374 | ECOD (1.6) |
VB [auth CC] | PF14374 | e4v6wCC3 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: PF14374 | ECOD (1.6) |
WB [auth Cm] | PF01020 | e4v6wCm1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01020 | ECOD (1.6) |
XB [auth Cn] | PF05162 | e4v6wCn1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: PF05162 | ECOD (1.6) |
YB [auth Cp] | PF01780 | e4v6wCp1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01780 | ECOD (1.6) |
ZB [auth Co] | PF00935 | e4v6wCo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00935 | ECOD (1.6) |
AC [auth CJ] | PF00281,PF00673 | e4v6wCJ1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
BC [auth CH] | PF00347 | e4v6wCH2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
CC [auth CE] | PF01159,PF03868 | e4v6wCE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01159,PF03868 | ECOD (1.6) |
DC [auth CG] | PF01248 | e4v6wCG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
PB [auth Cf] | PF01247 | e4v6wCf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF01247 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth AU] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
D [auth AK] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
E [auth AO] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
F [auth AX] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
G [auth AM] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
H [auth AS] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
J [auth AN] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
K [auth AL] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
K [auth AL] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
L [auth AR] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
M [auth AP] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
N [auth AT] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
O [auth AB] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
P [auth AA] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
P [auth AA] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
Q [auth AV] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
R [auth AY] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
S [auth AZ] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
W [auth AD] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
W [auth AD] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
W [auth AD] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
Z [auth AJ] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
Z [auth AJ] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
AA [auth AE] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
AA [auth AE] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
AA [auth AE] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
AA [auth AE] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
AA [auth AE] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
BA [auth AC] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
BA [auth AC] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
CA [auth AG] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
CA [auth AG] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
DA [auth AF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
DA [auth AF] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
EA [auth AH] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
EA [auth AH] | PF04774 | Hyaluronan / mRNA binding family (HABP4_PAI-RBP1) | Hyaluronan / mRNA binding family | - | Family |
FA [auth AW] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
GA [auth AI] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
HA [auth AQ] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
NA [auth CK] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
NA [auth CK] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
NA [auth CK] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
OA [auth CO] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
OA [auth CO] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
PA [auth CL] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
PA [auth CL] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
QA [auth CV] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
RA [auth CM] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | - | Family |
RA [auth CM] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
TA [auth CN] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
TA [auth CN] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
UA [auth CI] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
UA [auth CI] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
VA [auth CD] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
VA [auth CD] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
VA [auth CD] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
WA [auth CQ] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
WA [auth CQ] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
WA [auth CQ] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
XA [auth CR] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
XA [auth CR] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
YA [auth CA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
YA [auth CA] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
YA [auth CA] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
ZA [auth CS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
BB [auth CP] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
BB [auth CP] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
CB [auth CU] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
DB [auth CX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
EB [auth CY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
EB [auth CY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
FB [auth CW] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
GB [auth CZ] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
GB [auth CZ] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
GB [auth CZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
KB [auth CB] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
KB [auth CB] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
LB [auth CF] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
LB [auth CF] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
VB [auth CC] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
VB [auth CC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
VB [auth CC] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
AC [auth CJ] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
AC [auth CJ] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
AC [auth CJ] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
BC [auth CH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
BC [auth CH] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
CC [auth CE] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
CC [auth CE] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
DC [auth CG] | PF01199 | Ribosomal protein L34e (Ribosomal_L34e) | Ribosomal protein L34e | - | Family |
DC [auth CG] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
MA [auth Cq] | P05388 | :