Structure of the ribosome-SecYE complex in the membrane environment
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| G [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| I [auth AD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| L [auth AG] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
| M [auth AH] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| N [auth AI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| O [auth AJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
| P [auth AK] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| S [auth AN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
| U [auth AP] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| V [auth AQ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| X [auth AS] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| Z [auth AU] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| EA [auth B5] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8065348 | 3001911 | SCOP2B (2022-06-29) |
| FA [auth B6] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| FA [auth B6] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| GA [auth BD] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| HA [auth BE] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| IA [auth BF] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| KA [auth BH] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
| KA [auth BH] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
| LA [auth BI] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
| LA [auth BI] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
| MA [auth BJ] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| NA [auth BK] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| OA [auth BL] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| PA [auth BM] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| QA [auth BN] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| RA [auth BO] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| SA [auth BP] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| TA [auth BQ] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| VA [auth BS] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| WA [auth BT] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| XA [auth BU] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| YA [auth BV] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| ZA [auth BW] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| AB [auth BX] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| BB [auth BY] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| CB [auth BZ] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| DB [auth B0] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
| EB [auth B1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| GB [auth B3] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| HB [auth B4] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
| E [auth A0] | SCOP2B Superfamily | Apolipoprotein | 8072930 | 3001489 | SCOP2B (2022-06-29) |
| F [auth A1] | SCOP2B Superfamily | Apolipoprotein | 8072930 | 3001489 | SCOP2B (2022-06-29) |
| UA [auth BR] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| JA [auth BG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| JA [auth BG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| Q [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| K [auth AF] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth AZ] | TTL, ATPgrasp_YheCD | e4v6mAZ1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| G [auth AB] | FlaF_Ig-like | e4v6mAB1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.2) |
| H [auth AC] | Internalin_N | e4v6mAC1 | A: beta barrels | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Internalin_N | ECOD (v294.2) |
| I [auth AD] | Cellulase | e4v6mAD1 | A: beta barrels | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.2) |
| J [auth AE] | TTL, ATPgrasp_YheCD | e4v6mAE1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| L [auth AG] | Internalin_N | e4v6mAG1 | A: beta barrels | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Internalin_N | ECOD (v294.2) |
| M [auth AH] | TTL, ATPgrasp_YheCD | e4v6mAH1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| N [auth AI] | FlaF_Ig-like | e4v6mAI1 | A: beta barrels | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v294.2) |
| O [auth AJ] | TTL, ATPgrasp_YheCD | e4v6mAJ1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| P [auth AK] | TTL, ATPgrasp_YheCD | e4v6mAK1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| S [auth AN] | TTL, ATPgrasp_YheCD | e4v6mAN1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| T [auth AO] | TTL, ATPgrasp_YheCD | e4v6mAO1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| U [auth AP] | TTL, ATPgrasp_YheCD | e4v6mAP1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| V [auth AQ] | Cellulase | e4v6mAQ1 | A: beta barrels | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.2) |
| X [auth AS] | Cellulase | e4v6mAS1 | A: beta barrels | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.2) |
| Y [auth AT] | TTL, ATPgrasp_YheCD | e4v6mAT1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| Z [auth AU] | TTL, ATPgrasp_YheCD | e4v6mAU1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| DA [auth BB] | TTL, ATPgrasp_YheCD | e4v6mBB1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| EA [auth B5] | TTL, ATPgrasp_YheCD | e4v6mB51 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| FA [auth B6] | TTL, ATPgrasp_YheCD | e4v6mB61 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| GA [auth BD] | PemK_toxin | e4v6mBD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| HA [auth BE] | TTL, ATPgrasp_YheCD | e4v6mBE1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| IA [auth BF] | TTL, ATPgrasp_YheCD | e4v6mBF1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| KA [auth BH] | TTL, ATPgrasp_YheCD | e4v6mBH2 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| KA [auth BH] | PemK_toxin | e4v6mBH3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| LA [auth BI] | TTL, ATPgrasp_YheCD | e4v6mBI1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| MA [auth BJ] | TTL, ATPgrasp_YheCD | e4v6mBJ1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| NA [auth BK] | TTL, ATPgrasp_YheCD | e4v6mBK1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| OA [auth BL] | PemK_toxin | e4v6mBL1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| PA [auth BM] | Ribosomal_L19 | e4v6mBM1 | A: beta barrels | X: Repetitive alpha hairpins | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.2) |
| QA [auth BN] | TTL, ATPgrasp_YheCD | e4v6mBN1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| RA [auth BO] | TTL, ATPgrasp_YheCD | e4v6mBO1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| SA [auth BP] | Ribosomal_L19 | e4v6mBP1 | A: beta barrels | X: Repetitive alpha hairpins | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v294.2) |
| TA [auth BQ] | PemK_toxin | e4v6mBQ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| VA [auth BS] | TTL, ATPgrasp_YheCD | e4v6mBS1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| WA [auth BT] | TTL, ATPgrasp_YheCD | e4v6mBT1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| XA [auth BU] | TTL, ATPgrasp_YheCD | e4v6mBU1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| YA [auth BV] | TTL, ATPgrasp_YheCD | e4v6mBV1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| ZA [auth BW] | TTL, ATPgrasp_YheCD | e4v6mBW1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| AB [auth BX] | TTL, ATPgrasp_YheCD | e4v6mBX1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| BB [auth BY] | TTL, ATPgrasp_YheCD | e4v6mBY1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| CB [auth BZ] | TTL, ATPgrasp_YheCD | e4v6mBZ1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| DB [auth B0] | TTL, ATPgrasp_YheCD | e4v6mB01 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| EB [auth B1] | PemK_toxin | e4v6mB11 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v294.2) |
| FB [auth B2] | TTL, ATPgrasp_YheCD | e4v6mB21 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| GB [auth B3] | TTL, ATPgrasp_YheCD | e4v6mB31 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| HB [auth B4] | TTL, ATPgrasp_YheCD | e4v6mB41 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| E [auth A0] | TTL, ATPgrasp_YheCD | e4v6mA01 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| F [auth A1] | TTL, ATPgrasp_YheCD | e4v6mA11 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| UA [auth BR] | TTL, ATPgrasp_YheCD | e4v6mBR1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| JA [auth BG] | TTL, ATPgrasp_YheCD | e4v6mBG1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| CA [auth BA] | TTL, ATPgrasp_YheCD | e4v6mBA1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| W [auth AR] | TTL, ATPgrasp_YheCD | e4v6mAR1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| R [auth AM] | Cellulase | e4v6mAM1 | A: beta barrels | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v294.2) |
| Q [auth AL] | TTL, ATPgrasp_YheCD | e4v6mAL1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
| K [auth AF] | TTL, ATPgrasp_YheCD | e4v6mAF1 | A: beta barrels | X: Type III secretion system domain-like | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: Antibiotic binding domain of TipA-like multidrug resistance regulators | F: TTL, ATPgrasp_YheCD | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| D [auth AZ] | PF08478 | POTRA domain, FtsQ-type (POTRA_1) | POTRA domain, FtsQ-type | FtsQ/DivIB bacterial division proteins (Pfam:PF03799) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may ... | Domain |
| G [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| H [auth AC] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| H [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| I [auth AD] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| I [auth AD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| J [auth AE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| J [auth AE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| L [auth AG] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| M [auth AH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| N [auth AI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| O [auth AJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| P [auth AK] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| S [auth AN] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| U [auth AP] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| V [auth AQ] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| X [auth AS] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| Y [auth AT] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| Z [auth AU] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
| EA [auth B5] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| FA [auth B6] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| FA [auth B6] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| GA [auth BD] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| HA [auth BE] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| IA [auth BF] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| IA [auth BF] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| KA [auth BH] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| KA [auth BH] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| LA [auth BI] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| LA [auth BI] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| MA [auth BJ] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| NA [auth BK] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| OA [auth BL] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| PA [auth BM] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| QA [auth BN] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| RA [auth BO] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| SA [auth BP] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| TA [auth BQ] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| VA [auth BS] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| WA [auth BT] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| XA [auth BU] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| XA [auth BU] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| YA [auth BV] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| ZA [auth BW] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
| AB [auth BX] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| BB [auth BY] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| CB [auth BZ] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| DB [auth B0] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| EB [auth B1] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| FB [auth B2] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| GB [auth B3] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| HB [auth B4] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| E [auth A0], F [auth A1] | PF01442 | Apolipoprotein A1/A4/E domain (Apolipoprotein) | Apolipoprotein A1/A4/E domain | These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Swiss:P02647 Apolipoprotein A-I. Swiss:P06727 Apolipoprotein A-IV. Swiss:P02649 Apolipoprotein E. | Domain |
| UA [auth BR] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| JA [auth BG] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| W [auth AR] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| R [auth AM] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| Q [auth AL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| K [auth AF] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | General secretory pathway (Sec) | Protein translocase |














