Structure of the large subunit of the mammalian mitoribosome, part 1 of 2
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| EA [auth Y] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8082519 | 3000334 | SCOP2B (2022-06-29) |
| BA [auth V] | SCOP2B Superfamily | l21p-like | 8082451 | 3002005 | SCOP2B (2022-06-29) |
| Z [auth T] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8089132 | 3000334 | SCOP2B (2022-06-29) |
| Q [auth I] | SCOP2B Superfamily | L9 N-domain-like | 8070579 | 3000338 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth 0] | L51_S25_CI-B8 | e4v1901 | A: alpha arrays | X: Thioredoxin-like | H: Thioredoxin-like | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (v295.2) |
| B [auth 1] | Ribosomal_L35p | e4v1911 | A: alpha arrays | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: Ribosomal_L35p | ECOD (v295.2) |
| C [auth 2] | Ribosomal_L30 | e4v1921 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: Ribosomal_L30 | ECOD (v295.2) |
| D [auth 3] | Ribosomal_L30 | e4v1931 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: Ribosomal_L30 | ECOD (v295.2) |
| U [auth O] | L51_S25_CI-B8 | e4v19O1 | A: alpha arrays | X: Thioredoxin-like | H: Thioredoxin-like | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (v295.2) |
| AA [auth U] | KOW,ribosomal_L24 | e4v19U1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| EA [auth Y] | KOW,ribosomal_L24 | e4v19Y1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| I [auth 8] | Ribosomal_L2 | e4v1981 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: Ribosomal_L2 | ECOD (v295.2) |
| H [auth 7] | L51_S25_CI-B8 | e4v1971 | A: alpha arrays | X: Thioredoxin-like | H: Thioredoxin-like | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (v295.2) |
| G [auth 6] | Peptidase_C78 | e4v1961 | A: alpha arrays | X: Alpha-crystallin B chain N-terminal domain | H: Alpha-crystallin B chain N-terminal domain | T: Alpha-crystallin B chain N-terminal domain | F: Peptidase_C78 | ECOD (v295.2) |
| F [auth 5] | Ribosomal_L2 | e4v1951 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: Ribosomal_L2 | ECOD (v295.2) |
| E [auth 4] | Ribosomal_L2 | e4v1941 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: Ribosomal_L2 | ECOD (v295.2) |
| DA [auth X] | KOW,ribosomal_L24 | e4v19X1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| CA [auth W] | KOW,ribosomal_L24 | e4v19W1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| BA [auth V] | KOW,ribosomal_L24 | e4v19V1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| Z [auth T] | PDZ_2 | e4v19T1 | A: alpha arrays | X: Lipocalins/Streptavidin | H: Enterocin 7A and 7B | T: Enterocin 7A and 7B | F: PDZ_2 | ECOD (v295.2) |
| Y [auth S] | Ribosomal_L35p | e4v19S1 | A: alpha arrays | X: jelly-roll | H: Double-stranded beta-helix | T: Double-stranded beta-helix | F: Ribosomal_L35p | ECOD (v295.2) |
| X [auth R] | KOW,ribosomal_L24 | e4v19R1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| W [auth Q] | KOW,ribosomal_L24 | e4v19Q1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| V [auth P] | PemK_toxin | e4v19P1 | A: alpha arrays | X: Alpha-crystallin B chain N-terminal domain | H: profilin-like | T: C-terminal domain in DHH phosphoesterases | F: PemK_toxin | ECOD (v295.2) |
| T [auth N] | KOW,ribosomal_L24 | e4v19N1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| S [auth K] | L51_S25_CI-B8 | e4v19K1 | A: alpha arrays | X: Thioredoxin-like | H: Thioredoxin-like | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (v295.2) |
| R [auth J] | KOW,ribosomal_L24 | e4v19J1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| Q [auth I] | KOW,ribosomal_L24 | e4v19I1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: KOW,ribosomal_L24 | ECOD (v295.2) |
| P [auth F] | L51_S25_CI-B8 | e4v19F1 | A: alpha arrays | X: Thioredoxin-like | H: Thioredoxin-like | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (v295.2) |
| O [auth E] | PemK_toxin | e4v19E1 | A: alpha arrays | X: Alpha-crystallin B chain N-terminal domain | H: profilin-like | T: C-terminal domain in DHH phosphoesterases | F: PemK_toxin | ECOD (v295.2) |
| N [auth D] | Ribosomal_L2 | e4v19D1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: PEBP-like | F: Ribosomal_L2 | ECOD (v295.2) |
| J [auth 9] | L51_S25_CI-B8 | e4v1991 | A: alpha arrays | X: Thioredoxin-like | H: Thioredoxin-like | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| B [auth 1] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| C [auth 2] | PF06984 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47) | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) | - | Family |
| D [auth 3] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| U [auth O] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| AA [auth U] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| EA [auth Y] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| EA [auth Y] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| I [auth 8] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| H [auth 7] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| F [auth 5] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| DA [auth X] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| CA [auth W] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| BA [auth V] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| Z [auth T] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| Y [auth S] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
| X [auth R] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| V [auth P] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| T [auth N] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| R [auth J] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| Q [auth I] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| Q [auth I] | PF25131 | Large ribosomal subunit protein bL9m N-terminal domain (bL9m_N) | Large ribosomal subunit protein bL9m N-terminal domain | This is a presumed domain found at the very N-terminal of Large ribosomal subunit protein bL9m from animals, a structural component of the large subunit of the ribosome. According to structure predictions, it may consist in a hairpin with two beta-sh ... | Domain |
| P [auth F] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| O [auth E] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| N [auth D] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| N [auth D] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| J [auth 9] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain |














