4UYJ
Crystal structure of a Signal Recognition Particle Alu domain in the elongation arrest conformation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Signal recognition particle alu RNA binding heterodimer, SRP9/14 | 8035086 | 3000976 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Signal recognition particle alu RNA binding heterodimer, SRP9/14 | 8035086 | 3000976 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Signal recognition particle alu RNA binding heterodimer, SRP9/14 | 8035087 | 3000976 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Signal recognition particle alu RNA binding heterodimer, SRP9/14 | 8035087 | 3000976 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF05486 | e4uyjC1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF05486 | ECOD (1.6) |
A | PF05486 | e4uyjA1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF05486 | ECOD (1.6) |
D | PF02290 | e4uyjD1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF02290 | ECOD (1.6) |
B | PF02290 | e4uyjB1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF02290 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.30.720.10 | Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | Signal recognition particle alu RNA binding heterodimer, srp9/1 | CATH (4.3.0) |
A | 3.30.720.10 | Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | Signal recognition particle alu RNA binding heterodimer, srp9/1 | CATH (4.3.0) |
D | 3.30.720.10 | Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | Signal recognition particle alu RNA binding heterodimer, srp9/1 | CATH (4.3.0) |
B | 3.30.720.10 | Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | Signal recognition particle alu RNA binding heterodimer, srp9/1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05486 | Signal recognition particle 9 kDa protein (SRP9) (SRP9-21) | Signal recognition particle 9 kDa protein (SRP9) | This family consists of several eukaryotic SRP9 proteins. SRP9 together with the Alu-homologous region of 7SL RNA and SRP14 comprise the "Alu domain" of SRP, which mediates pausing of synthesis of ribosome associated nascent polypeptides that have be ... | Domain | |
PF02290 | Signal recognition particle 14kD protein (SRP14) | Signal recognition particle 14kD protein | The signal recognition particle (SRP) is a multimeric protein involved in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP14 and SRP9 form a complex essential for SRP RNA binding. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008832 | Signal recognition particle SRP9 | Family | |
IPR009018 | Signal recognition particle, SRP9/SRP14 subunit | Homologous Superfamily | |
IPR039432 | SRP9 domain | Domain | |
IPR039914 | Signal recognition particle SRP9-like | Family | |
IPR003210 | Signal recognition particle, SRP14 subunit | Family | |
IPR009018 | Signal recognition particle, SRP9/SRP14 subunit | Homologous Superfamily |