4UIS
The cryoEM structure of human gamma-Secretase complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Presenilin | e4uisB1 | A: alpha arrays | X: Presenilin family intramembrane aspartate proteases (From Topology) | H: Presenilin family intramembrane aspartate proteases (From Topology) | T: Presenilin family intramembrane aspartate proteases | F: Presenilin | ECOD (1.6) |
E [auth G] | Phage_lysozyme_2 | e4uisG1 | A: a+b complex topology | X: Lysozyme-like (From Homology) | H: Lysozyme-like | T: Lysozyme-like | F: Phage_lysozyme_2 | ECOD (1.6) |
A | Peptidase_M28 | e4uisA1 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M28 | ECOD (1.6) |
A | M28_Nicastrin | e4uisA2 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: M28_Nicastrin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth G] | PF00959 | Phage lysozyme (Phage_lysozyme) | Phage lysozyme | This family includes lambda phage lysozyme and E. coli endolysin. | Domain |
PF05450 | Nicastrin large lobe (Nicastrin) | Nicastrin | - | Family | |
PF18266 | Nicastrin small lobe (Ncstrn_small) | Nicastrin small lobe | This domain is part of the protein Nicastrin, a component of gamma secretase present in Homo sapiens. Gamma-secretase is thought to contribute to Alzheimer's disease development by generating beta-amyloid peptides. This domain is the known as the sma ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006639 | Presenilin/signal peptide peptidase | Family | |
IPR002031 | Peptidase A22A, presenilin 1 | Family | |
IPR042524 | Presenilin, C-terminal | Homologous Superfamily | |
IPR001108 | Peptidase A22A, presenilin | Family | |
E [auth G] | IPR052619 | Bacteriophage lysozyme-like | Family |
E [auth G] | IPR001165 | T4-type lysozyme | Family |
E [auth G] | IPR034690 | Endolysin T4 type | Family |
E [auth G] | IPR002196 | Glycoside hydrolase, family 24 | Family |
E [auth G] | IPR023347 | Lysozyme domain superfamily | Homologous Superfamily |
E [auth G] | IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily |
IPR041084 | Nicastrin, small lobe | Domain | |
IPR008710 | Nicastrin | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Peptidase AD | Gamma-secretase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |