4UI0
Crystal structure of the human RGMB-BMP2 complex, crystal form 2
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4ui0a_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Transforming growth factor (TGF)-beta | Bone morphogenetic protein-2 (BMP-2) | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d4ui0b_ | Small proteins | Cystine-knot cytokines | Cystine-knot cytokines | Transforming growth factor (TGF)-beta | Bone morphogenetic protein-2 (BMP-2) | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cystine-knot cytokines | 8042164 | 3000846 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cystine-knot cytokines | 8042164 | 3000846 | SCOP2B (2022-06-29) |
C | SCOP2 Family | RGM family, N-terminal helical domain | 8048358 | 4006069 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | RGM family, N-terminal helical domain | 8107356 | 3002873 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00019 | e4ui0A1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: PF00019 | ECOD (1.6) |
B | PF00019 | e4ui0B1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: PF00019 | ECOD (1.6) |
C | PF06535 | e4ui0C1 | A: alpha bundles | X: Spectrin repeat-like | H: Repulsive guidance molecule (RGM) N-terminal domain (From Topology) | T: Repulsive guidance molecule (RGM) N-terminal domain | F: PF06535 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
B | 2.10.90.10 | Mainly Beta | Ribbon | Cystine Knot Cytokines, subunit B | Cystine-knot cytokines | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00019 | Transforming growth factor beta like domain (TGF_beta) | Transforming growth factor beta like domain | - | Domain | |
PF06535 | Repulsive guidance molecule (RGM) N-terminus (RGM_N) | Repulsive guidance molecule (RGM) N-terminus | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029034 | Cystine-knot cytokine | Homologous Superfamily | |
IPR047953 | Bone morphogenetic protein 2, TGF-beta-like domain | Domain | |
IPR017948 | Transforming growth factor beta, conserved site | Conserved Site | |
IPR001839 | Transforming growth factor-beta, C-terminal | Domain | |
IPR015615 | Transforming growth factor-beta-related | Family | |
IPR001111 | TGF-beta, propeptide | Domain | |
IPR010536 | Repulsive guidance molecule, N-terminal | Domain | |
IPR009496 | Repulsive guidance molecule, C-terminal | Domain | |
IPR040287 | Repulsive guidance molecule | Family |