4TQ0
Crystal structure of human ATG5-ATG16N69
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | ATG16 | e4tq0B1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: ATG16 | ECOD (1.6) |
D | ATG16 | e4tq0D1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: ATG16 | ECOD (1.6) |
F | ATG16 | e4tq0F1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: ATG16 | ECOD (1.6) |
A | APG5_1st | e4tq0A1 | A: alpha bundles | X: Helical domain in autophagy protein 5 (From Topology) | H: Helical domain in autophagy protein 5 (From Topology) | T: Helical domain in autophagy protein 5 | F: APG5_1st | ECOD (1.6) |
A | APG5_2nd | e4tq0A2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: APG5_2nd | ECOD (1.6) |
A | KOG2976 | e4tq0A3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: KOG2976 | ECOD (1.6) |
C | APG5_1st | e4tq0C3 | A: alpha bundles | X: Helical domain in autophagy protein 5 (From Topology) | H: Helical domain in autophagy protein 5 (From Topology) | T: Helical domain in autophagy protein 5 | F: APG5_1st | ECOD (1.6) |
C | APG5_2nd | e4tq0C2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: APG5_2nd | ECOD (1.6) |
C | KOG2976 | e4tq0C1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: KOG2976 | ECOD (1.6) |
E | APG5_1st | e4tq0E1 | A: alpha bundles | X: Helical domain in autophagy protein 5 (From Topology) | H: Helical domain in autophagy protein 5 (From Topology) | T: Helical domain in autophagy protein 5 | F: APG5_1st | ECOD (1.6) |
E | APG5_2nd | e4tq0E3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: APG5_2nd | ECOD (1.6) |
E | KOG2976 | e4tq0E2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: KOG2976 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
A | 3.10.20.620 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
A | 1.10.246.190 | Mainly Alpha | Orthogonal Bundle | Serum Albumin | Chain A, Domain 1 | CATH (4.3.0) |
C | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C | 3.10.20.620 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
C | 1.10.246.190 | Mainly Alpha | Orthogonal Bundle | Serum Albumin | Chain A, Domain 1 | CATH (4.3.0) |
E | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
E | 3.10.20.620 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
E | 1.10.246.190 | Mainly Alpha | Orthogonal Bundle | Serum Albumin | Chain A, Domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20637 | Autophagy protein ATG5, alpha-helical bundle region (ATG5_HBR) | Autophagy protein ATG5, alpha-helical bundle region | Autophagy protein ATG5 is involved in autophagic vesicle formation. It is conjugated with ATG12, acting as an E3-like ubiquitin enzyme required for lipidation of ATG8 family proteins and their association to the vesicle membranes. ATG5 comprises two ... | Domain | |
PF20638 | Autophagy protein ATG5, UblA domain (ATG5_UblA) | Autophagy protein ATG5, UblA domain | This is the N-terminal ubiquitin-like domain, termed UblA, from autophagy protein ATG5 [1,2]. ATG5 comprises two ubiquitin-like domains (UblA and UblB) that flank a helix-rich domain (HBR). Both UblA and UblB comprise a five-stranded sheet and two-he ... | Domain | |
PF04106 | Autophagy protein ATG5, UblB domain (ATG5_UblB) | Autophagy protein ATG5, UblB domain | ATG5 is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway [1]. ATG5 is conjugated to ATG12; this conjugate exhibits E3 ligase-like activity which facilitates the lipidation of members of the LC3 famil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045160 | Autophagy-related protein 16 | Family | |
IPR019775 | WD40 repeat, conserved site | Conserved Site | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR013923 | Autophagy-related protein 16 domain | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR020472 | G-protein beta WD-40 repeat | Repeat | |
IPR048318 | Autophagy protein ATG5, UblB domain | Domain | |
IPR007239 | Autophagy-related protein 5 | Family | |
IPR042526 | Autophagy protein Atg5, helix rich domain | Homologous Superfamily | |
IPR048939 | Autophagy protein ATG5, UblA domain | Domain | |
IPR042527 | Autophagy protein Atg5, UblA domain superfamily | Homologous Superfamily | |
IPR048940 | Autophagy protein ATG5, alpha-helical bundle region | Domain |