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 4RPN | pdb_00004rpn

PcpR inducer binding domain complex with pentachlorophenol

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
D [auth B]d4rpnb_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Sphingobium chlorophenolicum ) [TaxId: 46429 ], SCOPe (2.08)
C [auth A]d4rpna_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Sphingobium chlorophenolicum ) [TaxId: 46429 ], SCOPe (2.08)
B [auth C]d4rpnc_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Sphingobium chlorophenolicum ) [TaxId: 46429 ], SCOPe (2.08)
A [auth D]d4rpnd_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Sphingobium chlorophenolicum ) [TaxId: 46429 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like 8086827 3000083 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyType 2 solute binding protein-like 8086827 3000083 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyType 2 solute binding protein-like 8086827 3000083 SCOP2B (2022-06-29)
A [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like 8086827 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth B]SBP_bac_1e4rpnB1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: SBP_bac_1ECOD (v295.2)
C [auth A]SBP_bac_1e4rpnA1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: SBP_bac_1ECOD (v295.2)
B [auth C]SBP_bac_1e4rpnC1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: SBP_bac_1ECOD (v295.2)
A [auth D]SBP_bac_1e4rpnD1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: SBP_bac_1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth B]3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
C [auth A]3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
B [auth C]3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A [auth D]3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D],
B [auth C],
C [auth A],
D [auth B]		PCP degradation transcriptional activation protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth D],
B [auth C],
C [auth A],
D [auth B]		IPR050389HTH-type transcriptional regulator YidZ/Nodulation protein-likeFamily
A [auth D],
B [auth C],
C [auth A],
D [auth B]		IPR005119LysR, substrate-bindingDomain
A [auth D],
B [auth C],
C [auth A],
D [auth B]		IPR000847LysR, HTH, N-terminal domainDomain
A [auth D],
B [auth C],
C [auth A],
D [auth B]		IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A [auth D],
B [auth C],
C [auth A],
D [auth B]		IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily