4RM0 | pdb_00004rm0

Crystal structure of Norovirus OIF P domain in complex with Lewis a trisaccharide

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BSlo-like_RCKe4rm0B1 A: a/b three-layered sandwichesX: C-terminal additional helical subdomain in reovirus polymerase lambda3H: C-terminal additional helical subdomain in reovirus polymerase lambda3T: C-terminal additional helical subdomain in reovirus polymerase lambda3F: Slo-like_RCKECOD (v294.1)
ASlo-like_RCKe4rm0A1 A: a/b three-layered sandwichesX: C-terminal additional helical subdomain in reovirus polymerase lambda3H: C-terminal additional helical subdomain in reovirus polymerase lambda3T: C-terminal additional helical subdomain in reovirus polymerase lambda3F: Slo-like_RCKECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.40.510.10 Mainly Beta Beta Barrel Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA virusesCATH (4.3.0)
B2.40.30.120 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
A2.40.510.10 Mainly Beta Beta Barrel Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA virusesCATH (4.3.0)
A2.40.30.120 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Capsid protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR029053Viral coat protein subunitHomologous Superfamily
A, B
IPR004005Calicivirus coat proteinDomain
A, B
IPR013643Calicivirus coat protein C-terminalDomain
A, B
IPR033703Picornavirus/Calicivirus coat proteinDomain