4RI5

Crystal structure of PTPN3 (PTPH1) D811E mutant in complex with metavanadate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4ri5a1	Alpha and beta proteins (a/b)	(Phosphotyrosine protein) phosphatases II	(Phosphotyrosine protein) phosphatases II	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4ri5a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4ri5b1	Alpha and beta proteins (a/b)	(Phosphotyrosine protein) phosphatases II	(Phosphotyrosine protein) phosphatases II	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4ri5b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	(Phosphotyrosine protein) phosphatases II	8078039	3000304	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Phosphotyrosine protein) phosphatases II	8078039	3000304	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Y_phosphatase	e4ri5A1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: (Phosphotyrosine protein) phosphatases II	F: Y_phosphatase	ECOD (1.6)
B	Y_phosphatase	e4ri5B1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: (Phosphotyrosine protein) phosphatases II	F: Y_phosphatase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.190.10	Alpha Beta	Alpha-Beta Complex	Protein-Tyrosine Phosphatase	Chain A	CATH (4.3.0)
B	3.90.190.10	Alpha Beta	Alpha-Beta Complex	Protein-Tyrosine Phosphatase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00102	Protein-tyrosine phosphatase (Y_phosphatase)	Protein-tyrosine phosphatase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Tyrosine-protein phosphatase non-receptor type 3	cytoskeletal protein binding protein binding binding phosphoprotein binding phosphotyrosine residue binding protein phosphorylated amino acid binding phosphoric ester hydrolase activity phosphoprotein phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity phosphatase activity hydrolase activity catalytic activity cytoskeletal protein binding protein binding binding phosphoprotein binding phosphotyrosine residue binding protein phosphorylated amino acid binding phosphoric ester hydrolase activity phosphoprotein phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity phosphatase activity hydrolase activity catalytic activity channel regulator activity ion channel regulator activity molecular function regulator activity sodium channel regulator activity transporter regulator activity ATPase binding enzyme binding	regulation of localization regulation of cellular process transport monoatomic ion transmembrane transport regulation of transmembrane transporter activity sodium ion transmembrane transport regulation of monoatomic ion transmembrane transport regulation of sodium ion transport regulation of sodium ion transmembrane transport metal ion transport regulation of transporter activity monoatomic cation transmembrane transport regulation of sodium ion transmembrane transporter activity localization regulation of localization regulation of cellular process transport monoatomic ion transmembrane transport regulation of transmembrane transporter activity sodium ion transmembrane transport regulation of monoatomic ion transmembrane transport regulation of sodium ion transport regulation of sodium ion transmembrane transport metal ion transport regulation of transporter activity monoatomic cation transmembrane transport regulation of sodium ion transmembrane transporter activity localization monoatomic ion transport monoatomic cation transport regulation of metal ion transport regulation of monoatomic ion transmembrane transporter activity regulation of biological process regulation of transport regulation of monoatomic ion transport biological regulation inorganic ion transmembrane transport establishment of localization inorganic cation transmembrane transport transmembrane transport regulation of molecular function regulation of transmembrane transport cellular process regulation of monoatomic cation transmembrane transport sodium ion transport protein dephosphorylation dephosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process cellular response to stimulus response to stimulus signaling negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cell communication regulation of epidermal growth factor receptor signaling pathway negative regulation of cellular process epidermal growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling regulation of ERBB signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus negative regulation of epidermal growth factor receptor signaling pathway ERBB signaling pathway regulation of cell communication developmental process multicellular organismal process gland development animal organ development animal organ regeneration liver development regeneration multicellular organism development hepaticobiliary system development anatomical structure development liver regeneration system development membrane depolarization during action potential action potential regulation of membrane depolarization membrane depolarization regulation of biological quality regulation of membrane depolarization during action potential regulation of membrane potential intracellular signal transduction intracellular signaling cassette MAPK cascade negative regulation of membrane protein ectodomain proteolysis catabolic process negative regulation of proteolysis macromolecule catabolic process regulation of primary metabolic process negative regulation of protein catabolic process regulation of proteolysis proteolysis membrane protein proteolysis negative regulation of protein metabolic process membrane protein ectodomain proteolysis negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of membrane protein ectodomain proteolysis regulation of protein metabolic process negative regulation of metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process regulation of metabolic process regulation of protein catabolic process negative regulation of cell cycle negative regulation of mitotic cell cycle mitotic cell cycle regulation of mitotic cell cycle cell cycle regulation of cell cycle	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasmic side of plasma membrane cytoplasmic side of membrane cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000299	FERM domain	Domain
A, B	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A, B	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
A, B	IPR019748	FERM central domain	Domain
A, B	IPR018980	FERM, C-terminal PH-like domain	Domain
A, B	IPR012151	Protein-tyrosine phosphatase, non-receptor type-3, -4	Family
A, B	IPR041783	PTPN3/4, FERM domain C-lobe	Domain
A, B	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
A, B	IPR019749	Band 4.1 domain	Domain
A, B	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
A, B	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A, B	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain	Domain
A, B	IPR036034	PDZ superfamily	Homologous Superfamily
A, B	IPR019747	FERM conserved site	Conserved Site
A, B	IPR000387	Tyrosine-specific protein phosphatases domain	Domain
A, B	IPR018979	FERM, N-terminal	Domain
A, B	IPR001478	PDZ domain	Domain
A, B	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P26045	cholangiocarcinoma bile duct carcinoma pituitary cancer subependymal giant cell astrocytoma astrocytic tumor Duchenne muscular dystrophy large cell medulloblastoma malignant glioma myopathy pancreatic ductal adenocarcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor glioblastoma malignant colon neoplasm malignant mesothelioma cholangiocarcinoma bile duct carcinoma pituitary cancer subependymal giant cell astrocytoma astrocytic tumor Duchenne muscular dystrophy large cell medulloblastoma malignant glioma myopathy pancreatic ductal adenocarcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor glioblastoma malignant colon neoplasm malignant mesothelioma oligodendroglioma pilocytic astrocytoma spina bifida bile duct cancer cholelithiasis interstitial cystitis malignant ependymoma medulloblastoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.