Skip to main content

 4Q3E | pdb_00004q3e

PylD cocrystallized with L-Ornithine-Nd-D-lysine and NAD+

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPRMT_Ce4q3eB1 A: alpha arraysX: Glycosyl hydrolase domain-likeH: alpha/alpha toroidT: alpha/alpha toroidF: PRMT_CECOD (v295.2)
BRibosomal_L41e4q3eB2 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ribosomal_L41ECOD (v295.2)
APRMT_Ce4q3eA1 A: alpha arraysX: Glycosyl hydrolase domain-likeH: alpha/alpha toroidT: alpha/alpha toroidF: PRMT_CECOD (v295.2)
ARibosomal_L41e4q3eA2 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ribosomal_L41ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.12150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.40.50.12150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
PYLD, pyrrolysine synthase- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR048757Pyrrolysine biosynthesis protein PylD, N-terminal domainDomain
A, B
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B
IPR023914Pyrrolysine biosynthesis protein PylDFamily