4PUF
Complex between the Salmonella T3SS effector SlrP and its human target thioredoxin-1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Novel E3 ligase (NEL), C-terminal domain-like | 8050057 | 4006749 | SCOP2 (2022-06-29) |
A | SCOP2 Family | YopM-like | 8052847 | 4003209 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Novel E3 ligase (NEL), C-terminal domain -like | 8052848 | 3002145 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | L domain-like | 8052849 | 3001010 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Novel E3 ligase (NEL), C-terminal domain -like | 8052848 | 3002145 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | L domain-like | 8052849 | 3001010 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Thioredoxin-like | 8042720 | 3000031 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Thioredoxin-like | 8042720 | 3000031 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | LRR_8_1 | e4pufA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
A | NEL | e4pufA2 | A: alpha arrays | X: Novel E3 ligase (NEL) (From Topology) | H: Novel E3 ligase (NEL) (From Topology) | T: Novel E3 ligase (NEL) | F: NEL | ECOD (1.6) |
B | LRR_8_1 | e4pufB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Leucine-rich repeats (From Topology) | T: Leucine-rich repeats | F: LRR_8_1 | ECOD (1.6) |
B | NEL | e4pufB2 | A: alpha arrays | X: Novel E3 ligase (NEL) (From Topology) | H: Novel E3 ligase (NEL) (From Topology) | T: Novel E3 ligase (NEL) | F: NEL | ECOD (1.6) |
C | Thioredoxin | e4pufC1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
D | Thioredoxin | e4pufD1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
B | 3.80.10.10 | Alpha Beta | Alpha-Beta Horseshoe | Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) | Ribonuclease Inhibitor | CATH (4.3.0) |
C | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
D | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF14496 | C-terminal novel E3 ligase, LRR-interacting (NEL) | C-terminal novel E3 ligase, LRR-interacting | This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus o ... | Domain | |
PF00085 | Thioredoxin (Thioredoxin) | Thioredoxin | Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001611 | Leucine-rich repeat | Repeat | |
IPR003591 | Leucine-rich repeat, typical subtype | Repeat | |
IPR051071 | Leucine-rich repeat-containing bacterial E3 ubiquitin ligases | Family | |
IPR032675 | Leucine-rich repeat domain superfamily | Homologous Superfamily | |
IPR032674 | LRR-containing bacterial E3 ligase, N-terminal | Domain | |
IPR029487 | Novel E3 ligase domain | Domain | |
IPR017937 | Thioredoxin, conserved site | Conserved Site | |
IPR013766 | Thioredoxin domain | Domain | |
IPR005746 | Thioredoxin | Family | |
IPR036249 | Thioredoxin-like superfamily | Homologous Superfamily |