N-terminal domain of the capsid protein from bovine leukaemia virus (with no beta-hairpin)
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | Retrovirus capsid protein N-terminal core domain | 8077447 | 3000745 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Retrovirus capsid protein N-terminal core domain | 8077447 | 3000745 | SCOP2B (2021-05-27) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF00607 | e4ph3A1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF00607 | ECOD (1.6) |
B | PF00607 | e4ph3B1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF00607 | ECOD (1.6) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
| BLV capsid | | | |
Chains | Accession | Name | Type |
---|
| IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
| IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily |
| IPR001995 | Peptidase A2A, retrovirus, catalytic | Domain |
| IPR003139 | Delta-retroviral matrix protein | Domain |
| IPR001878 | Zinc finger, CCHC-type | Domain |
| IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily |
| IPR010999 | Retroviral matrix protein | Homologous Superfamily |
| IPR021109 | Aspartic peptidase domain superfamily | Homologous Superfamily |
| IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |
| IPR018061 | Retropepsins | Domain |
| IPR002156 | Ribonuclease H domain | Domain |
| IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily |
| IPR001584 | Integrase, catalytic core | Domain |
| IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
| IPR001037 | Integrase, C-terminal, retroviral | Domain |
| IPR000477 | Reverse transcriptase domain | Domain |
| IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily |
Protein Modification Annotation
Modified Residue(s) |
---|
Chain | Residue(s) | Description |
---|
| CSO | Parent Component: CYS
RESID:  AA0205
PSI-MOD :  L-cysteine sulfenic acid MOD:00210 |