4PG8
Crystal structure of S. aureus Homoserine Dehydrogenase at pH8.5
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Homoserine_dh | e4pg8A1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Homoserine_dh | ECOD (1.6) |
A | EUF08351 | e4pg8A2 | A: a+b two layers | X: Alpha-beta plaits | H: ACT-like (From Topology) | T: ACT-like | F: EUF08351 | ECOD (1.6) |
A | NAD_binding_3 | e4pg8A3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: NAD_binding_3 | ECOD (1.6) |
B | Homoserine_dh | e4pg8B3 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Homoserine_dh | ECOD (1.6) |
B | EUF08351 | e4pg8B1 | A: a+b two layers | X: Alpha-beta plaits | H: ACT-like (From Topology) | T: ACT-like | F: EUF08351 | ECOD (1.6) |
B | NAD_binding_3 | e4pg8B2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: NAD_binding_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
A | 3.30.360.10 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
A | 3.30.70.3100 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) | |
B | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
B | 3.30.360.10 | Alpha Beta | 2-Layer Sandwich | Dihydrodipicolinate Reductase | domain 2 | CATH (4.3.0) |
B | 3.30.70.3100 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF22101 | Homoserine dehydrogenase C-terminal domain (HSD_C) | Homoserine dehydrogenase C-terminal domain | Homoserine dehydrogenase (HSD) coordinates a critical branch point of the metabolic pathway that leads to the synthesis of bacterial cell-wall components such as L-lysine and m-DAP in addition to other amino acids such as L-threonine, L-methionine an ... | Domain | |
PF03447 | Homoserine dehydrogenase, NAD binding domain (NAD_binding_3) | Homoserine dehydrogenase, NAD binding domain | This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model. | Domain | |
PF00742 | Homoserine dehydrogenase (Homoserine_dh) | Homoserine dehydrogenase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019811 | Homoserine dehydrogenase, conserved site | Conserved Site | |
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR016204 | Homoserine dehydrogenase | Family | |
IPR001342 | Homoserine dehydrogenase, catalytic | Domain | |
IPR054326 | Homoserine dehydrogenase, C-terminal domain | Domain | |
IPR005106 | Aspartate/homoserine dehydrogenase, NAD-binding | Domain |